PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01394
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 275aa    MW: 31496 Da    PI: 8.4391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01394genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1483135155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++++h e+Er+RR+++ s f++Lr+llP       ++K s a+ + ++v+YIk+Lq
  AA53G01394  83 KKMKHREIERQRRRHVSSLFDTLRSLLPIqY---IKGKRSSADHVLQTVNYIKMLQ 135
                 6899*************************66...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1580147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-1381139No hitNo description
PROSITE profilePS5088814.61582134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1283135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1083149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-588140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDFISSLLTP NFTDEDGILF SDSLILSPLI SNHNHDDDDH HHHNQMITKK VKNKRKRRCM  60
SNINNDTSSY GNSGCCDDEQ ERKKMKHREI ERQRRRHVSS LFDTLRSLLP IQYIKGKRSS  120
ADHVLQTVNY IKMLQNNIKE LSEKRDGIKK CITDKTAKTH ISSVDECTSS LSSSTTSTST  180
SSSCSCVGDK HVTVVVMPCF VGVEIIISCC LGHNFCLSSV LQMLTEEQRF NVVSCLSTRM  240
QQRFMHTIVS QVDVEMKTNL SELKDKIINM WFQRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187RKKMKHR
28195RKKMKHREIERQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609548.11e-93PREDICTED: transcription factor bHLH125
SwissprotQ9LQ081e-89BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A0D3E3T03e-92A0A0D3E3T0_BRAOL; Uncharacterized protein
STRINGBostr.22157s0026.1.p2e-98(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.15e-87bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]