PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00276
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 426aa    MW: 47523.8 Da    PI: 5.5504
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00276genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.5e-061150437
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 C+ ++e  + lfC+ +   lC  C ++ H        H
  AA3G00276 11 VPCDFCGERTAVLFCRADTAKLCLPCDQHVHAAnllsqkH 50
               57******99*******************99545555555 PP
2zf-B_box23.31.4e-075394340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htvv 40
                ++C+++++++++  C++++  lC++C    H +    H+++
  AA3G00276 53 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssaHNRS 94
               689*************************99994488888776 PP
3CCT66.38.5e-23381423143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                R +a++RYkeKrktR+F+K+irYesRKa+A++R RvKGrFvk+
  AA3G00276 381 RGNAMQRYKEKRKTRRFDKTIRYESRKARADTRLRVKGRFVKA 423
                7789*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.698855IPR000315B-box-type zinc finger
SMARTSM003362.1E-12855IPR000315B-box-type zinc finger
CDDcd000211.09E-91155No hitNo description
PROSITE profilePS501199.1725196IPR000315B-box-type zinc finger
CDDcd000212.88E-85596No hitNo description
SMARTSM003360.425696IPR000315B-box-type zinc finger
PfamPF062032.2E-17381423IPR010402CCT domain
PROSITE profilePS5101715.229381423IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGSSTKSKET VPCDFCGERT AVLFCRADTA KLCLPCDQHV HAANLLSQKH VRSQICDNCS  60
KEPVSVRCFT DNLVLCQECD WDVHGSCSSA HNRSTVDGFA GCPSVFELAS IWGLDLEEKN  120
KEIDDESPLI SKNFEMPLEL WGCGSSNAQE LIVPNDLLIL KRNPNLGRYK QVVYKQLVEL  180
LKRGFVGGED EVEEEGERDG NGNGNCNGND EVDGGGGEIM VPEMEERLGG WRGNQQQSPT  240
TSFTSLLLQS NDYENRSRIG QQSTQIWDFN LGKSRNVEEA NHVEGATYDE HKGSSSTFTL  300
NNLIDLKNDT YPTNLKALRE TYQGAGTSES NNLPTNAIDS KKGSTSNNVN ELQFAEHIGT  360
SMGTRQVVAT NADLERLAQN RGNAMQRYKE KRKTRRFDKT IRYESRKARA DTRLRVKGRF  420
VKAFEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010413851.11e-161PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X1
RefseqXP_010413852.11e-161PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X2
SwissprotO228001e-160COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLC0SV721e-158C0SV72_ARATH; Uncharacterized protein At2g33500 (Fragment)
STRINGBostr.23794s0751.1.p1e-163(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-158B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]