PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00690
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 396aa    MW: 44749.1 Da    PI: 5.0191
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00690genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248e-081457340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + + +++++C  ++ +lC+ C    H+       H++v
  AA39G00690 14 ARACDSCVKRRARWYCAADDAFLCQVCDGLVHSAnplarrHERV 57
                578*************************9999557777778776 PP
2CCT68.32e-23337380144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  AA39G00690 337 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 380
                 9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.7E-101259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5521259IPR000315B-box-type zinc finger
PfamPF006431.7E-61457IPR000315B-box-type zinc finger
CDDcd000211.00E-91559No hitNo description
PfamPF062035.2E-18337379IPR010402CCT domain
PROSITE profilePS5101716.083337379IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MKSSLANAVG GKTARACDSC VKRRARWYCA ADDAFLCQVC DGLVHSANPL ARRHERVRLK  60
SSTTTPTTRK HHSSAATWHQ GFTRKARTPR GTKKNHLSNI FHDLVPEISV EDQTTDSYEL  120
EDQLMICQVP VLDPTVENQS LNEAIEPKIE FCMPQEDDDH AESCLNGFFP TDIELEEFAA  180
DVETLLGGGL DTHDHHQAYV MEELGLSNGN SSNSEMFKVE KEEEEEEEMG ICEDGTVPFE  240
LSFDYESQKM NEEEVMIKNV VKEEEEQKSV KMLRLNYDAV ITMWGTQGPP WTAGDPPELD  300
LDIDGWPMTS PMEGISNEKQ YVSGLGLNSG GFGDGGREAR VSRYREKRRT RLFSKKIRYE  360
VRKLNAEKRP RMKGRFVKRT SLTVPTTSNS PLAINF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347363RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415872.10.0zinc finger protein CONSTANS-LIKE 16
RefseqXP_013711556.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-178COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1J3JND80.0A0A1J3JND8_NOCCA; Zinc finger protein CONSTANS-LIKE 16
STRINGXP_006415872.11e-180(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-158B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]