PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA399G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 381aa    MW: 41914 Da    PI: 8.4788
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA399G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.92.1e-0879119438
     zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                  r C+ +++  ++lfC+ +  +lC +C  ++H        H+
  AA399G00003  79 RPCDSCKSTAAILFCRADTAFLCGECDGKIHTAnklashHE 119
                  68******99*********************5567777665 PP
2zf-B_box26.61.2e-08121166342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  AA399G00003 121 VWLCEVCEQAPAHVMCKADAAALCITCDRDIHSAnplarrHERVPV 166
                  689*****************************66899999999986 PP
3CCT691.2e-23316359144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k+a
  AA399G00003 316 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRA 359
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-1276123IPR000315B-box-type zinc finger
PROSITE profilePS501199.75576123IPR000315B-box-type zinc finger
PfamPF006434.1E-679119IPR000315B-box-type zinc finger
CDDcd000212.52E-779123No hitNo description
PROSITE profilePS5011911.092119166IPR000315B-box-type zinc finger
PfamPF006435.7E-7121166IPR000315B-box-type zinc finger
CDDcd000214.08E-9122166No hitNo description
SMARTSM003361.3E-9124166IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658316358IPR010402CCT domain
PfamPF062032.2E-17316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MHMLLLSNFN SFAIRLRFDD TCRFSNRYPQ ISLDPPTSSP SAFYTIATLR ASRVNRAQTN  60
SSSSHYSPHK ERKRFMASRP CDSCKSTAAI LFCRADTAFL CGECDGKIHT ANKLASHHER  120
VWLCEVCEQA PAHVMCKADA AALCITCDRD IHSANPLARR HERVPVTPFY DILGSEGSAK  180
SASSVNFLDD AEGDADVSKE AASWLLPNPT NKEGGDSFNL FSDLDYSAMD LKTEASGNSS  240
GNDGVVPVKN TRAPFLNEDY FNFEISPSKT FQFSNISQNV SSTSLDVALV PEGGAMSEMS  300
NTTTAAPAVQ LSPAEREARV LRYREKRKNR KFEKTIRYAS RKAYAEMRPR IKGRFAKRAD  360
GKSGHDGGRG DVGGFGVVPS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA399G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405043.11e-165zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-140COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLV4NJM41e-163V4NJM4_EUTSA; Uncharacterized protein
STRINGXP_006405043.11e-164(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-142CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]