PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA347G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 477aa    MW: 52857.2 Da    PI: 5.9959
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA347G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.7e-06546237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +   C+ ++e  +  fC+ +   lC  C ++ H        H
  AA347G00006  5 KREPCDFCGERTAVVFCKADTAKLCLPCDQQVHAAnplsrkH 46
                 5678*******9*******************99545555555 PP
2CCT47.37.2e-174424731445
          CCT  14 tRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  t +F+K+irYesRKa+Ae+R RvKGrFvk++e
  AA347G00006 442 TNRFDKTIRYESRKARAETRLRVKGRFVKASE 473
                  568**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.67451IPR000315B-box-type zinc finger
SMARTSM003363.3E-13451IPR000315B-box-type zinc finger
CDDcd000213.04E-8851No hitNo description
CDDcd000211.11E-45180No hitNo description
PROSITE profilePS510179.921429471IPR010402CCT domain
PfamPF062032.9E-11444471IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSSSKREPCD FCGERTAVVF CKADTAKLCL PCDQQVHAAN PLSRKHVRSQ ICDNCCKEPV  60
SIRCDTENLI LCQECDWDVH GSCSISVAHV RSAVDGFSGC PSAWELAALW RIDLEERKEK  120
NDVQLMMENF GMELDSWISG SNVAQELTVP NDVPFMKHGS TCGKYKHVMY KQLEELLKRV  180
DISGDVERDC NSDCDGGGDG GVGGCGDGVG GEEDIMVPEM PDRLGCSRDL EEINGGTEAI  240
QNSPTTSFTS LLMYPTEYEG GSGDGMQRNA AHPSGGQSSQ IWDFHLGQSR GPEDPTRMEA  300
AYVTKGAISW RIENFVDLMN ETCSTYSKGV KAIHQDDYNR SSSGQGPATP ENNNHPGSKK  360
GTNCSSDLQF SEDFAGTSCK TTRLVATKAD LEQLAQNRGN AMQRYKEKRK SRRQAAAFSS  420
LIVFLFPKIL IRFSHLFWML DTNRFDKTIR YESRKARAET RLRVKGRFVK ASEGSYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA347G00006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415704.10.0zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLV4KVL40.0V4KVL4_EUTSA; Uncharacterized protein
STRINGBostr.15697s0122.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]