PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA31G00401

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

SRS

Protein Properties

Length: 362aa MW: 40109.5 Da PI: 7.341

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA31G00401	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.8	2.8e-68	117	278	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..kskkqsalsstklssaes 96 r+g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrer +ql++++++++++a a+ a+kr+re + + + ++s+ +++ +s AA31G00401 117 RQGGMNCQDCGNQAKKDCQHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLSSLQNSSSNAAaaASTAAKRHREGedHRDGNGTVSAGPVVNPNS 215 7899************************************************999987766665344555566665444566677777777777777 PP DUF702 97 kkeletss...lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 ++ le s lP+evss+avfrcvrvss+++ +eee+aYqtav+igGhvfkGiLy+qG+++ AA31G00401 216 NSGLELVSqqnLPPEVSSPAVFRCVRVSSMEEdeDEEEFAYQTAVNIGGHVFKGILYNQGPDH 278 76665544456***************98434566*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-64	120	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.1E-28	122	164	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.8E-25	227	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAGFFYLGGR ENNNKQDHHH HQHQVDKSNY LYLYKDEIYN NNKGFEIWPQ QEQENEQEQQ 60 HHVSSTTTPT NFYSFGSSSS NNRSRSLYFN FHEQPLLRSS LGGGLNNGGG GGFTVTRQGG 120 MNCQDCGNQA KKDCQHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LSSLQNSSSN 180 AAAAASTAAK RHREGEDHRD GNGTVSAGPV VNPNSNSGLE LVSQQNLPPE VSSPAVFRCV 240 RVSSMEEDED EEEFAYQTAV NIGGHVFKGI LYNQGPDHNN HHYCYTSSSP TTMAETSQHN 300 HHLNLLASTA TNTTANAVET SAKRSVSNNN NNGLILEHNS SVYSASMNTY ISGTQFFPNP 360 RS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAGFFYLGGR ENNNKQDHHH HQHQVDKSNY LYLYKDEIYN NNKGFEIWPQ QEQENEQEQQ  60
HHVSSTTTPT NFYSFGSSSS NNRSRSLYFN FHEQPLLRSS LGGGLNNGGG GGFTVTRQGG  120
MNCQDCGNQA KKDCQHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERLAQ LSSLQNSSSN  180
AAAAASTAAK RHREGEDHRD GNGTVSAGPV VNPNSNSGLE LVSQQNLPPE VSSPAVFRCV  240
RVSSMEEDED EEEFAYQTAV NIGGHVFKGI LYNQGPDHNN HHYCYTSSSP TTMAETSQHN  300
HHLNLLASTA TNTTANAVET SAKRSVSNNN NNGLILEHNS SVYSASMNTY ISGTQFFPNP  360
RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA31G00401

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006434	2e-60	AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBank	AC023754	2e-60	AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBank	AY800620	2e-60	AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBank	AY924730	2e-60	AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
GenBank	CP002684	2e-60	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002889030.1	1e-137	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	1e-138	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A3N6RKM8	1e-136	A0A3N6RKM8_BRACR; Uncharacterized protein
STRING	fgenesh2_kg.2__1830__AT1G75520.1	1e-137	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-81	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]