PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00142
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 322aa    MW: 34627.5 Da    PI: 7.1084
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00142genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.24.3e-68792372154
      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsalsstkl 91 
                 rs t++C+dCGnqakkdC+h+RCRtCCksrgfdCathv+stW+p+a+rrerqqql+ ++++ a +            + +kr+r+    ++ ++ss++l
  AA30G00142  79 RSITITCRDCGNQAKKDCSHMRCRTCCKSRGFDCATHVRSTWIPVARRRERQQQLQISTASGAGDGggggggvtgGVNVPKRHRD----TTGTSSSSRL 173
                 67899***************************************************99999888878999986554555555554....4666677777 PP

      DUF702  92 ssaeskkel.etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 +s ++  e+   +s+P+evss+avfrcvr+s++ddg+ ++aYqt+v+i+Gh+fkGiLydqGl++
  AA30G00142 174 PSDSTGLEMaGEASFPAEVSSDAVFRCVRMSGIDDGDGQYAYQTTVNINGHLFKGILYDQGLDQ 237
                 77777666515667***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-6382236IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.1E-2684126IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-29188235IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGRFSLTNN NNNIEDQEQE KSTNWVWCRN PNSSQQIWQI PAEQTQFMHH HQHQQSLDLY  60
HHHNQIDVSD LANSSSSSRS ITITCRDCGN QAKKDCSHMR CRTCCKSRGF DCATHVRSTW  120
IPVARRRERQ QQLQISTASG AGDGGGGGGG VTGGVNVPKR HRDTTGTSSS SRLPSDSTGL  180
EMAGEASFPA EVSSDAVFRC VRMSGIDDGD GQYAYQTTVN INGHLFKGIL YDQGLDQNYN  240
NNISGGSGGS DHQSSSAGGG NGGAGAGQMF SNLTVNDGGG GSGGGRTSSM FVDPNSTNYY  300
SNNMTTMFMP SGNQFYQNPP RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412014.11e-134protein SHI RELATED SEQUENCE 2
SwissprotO655171e-115SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME111e-133V4ME11_EUTSA; Uncharacterized protein
STRINGXP_006412014.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.17e-89Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]