PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00822
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 338aa    MW: 38280 Da    PI: 5.8329
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00822genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.8e-08345339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 ++C+++   ++ ++C++++  lC +C +++H+       Ht+
  AA26G00822  3 VPMCDHCVTAPAVIYCKSDSAKLCLTCDVHIHSAnplshrHTR 45
                689****************************966888855655 PP
2CCT56.97.5e-20292335144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R +a+lRY+eK+ +R F K+irY+sRKa+A++R+RvKGrFvk+ 
  AA26G00822 292 RIRAKLRYNEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAG 335
                 445669***********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.115148IPR000315B-box-type zinc finger
SMARTSM003361.8E-12148IPR000315B-box-type zinc finger
PfamPF006433.9E-6245IPR000315B-box-type zinc finger
CDDcd000219.53E-6448No hitNo description
PROSITE profilePS5101713.801292334IPR010402CCT domain
PfamPF062032.0E-14293334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEVPMCDHCV TAPAVIYCKS DSAKLCLTCD VHIHSANPLS HRHTRSLICE KCFSQPGVIR  60
CVDENVSHCQ GCHWHASNCS VLGHKIQTLE HFSGCPSQVD LIKLWSSNLE LLVPFNDKSI  120
MDQIESNNTL FETLEISGCT DNLDDQSSHF SPESIEASCP DSLLKLEDDE DLHELNLDYA  180
SLNFDVGDDF MKCLSPQDHV ESSHSENVVQ DHLFVDMNAS VNKTGFIPSS PLSPDLFGQV  240
NQNMSFSISN MTCESRAVDY EYEYRDCGVS PSFVMCDSPW ETNLKENYRQ ARIRAKLRYN  300
EKKLKRSFGK QIRYASRKAR ADTRKRVKGR FVKAGDYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406230.21e-126zinc finger protein CONSTANS-LIKE 12
SwissprotQ9LJ441e-118COL12_ARATH; Zinc finger protein CONSTANS-LIKE 12
TrEMBLV4M5W21e-124V4M5W2_EUTSA; Uncharacterized protein
STRINGXP_006406230.11e-125(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-111B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]