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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA19G00371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Trihelix | ||||||||
Protein Properties | Length: 251aa MW: 30482.1 Da PI: 6.6506 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.2 | 3.7e-17 | 2 | 62 | 23 | 86 |
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++k++k lWe vs+km ++gf rs++qCk+kw+nl +ryk+++++e + ++++p++++++ AA19G00371 2 ETKRNKLLWEVVSAKMTDKGFLRSSEQCKSKWKNLVTRYKACETSEAEA---IRQHFPFYNEIQ 62 56889******************************************85...55679***9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.5E-14 | 3 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
METKRNKLLW EVVSAKMTDK GFLRSSEQCK SKWKNLVTRY KACETSEAEA IRQHFPFYNE 60 IQSIFTSRMQ RMLWSEPSTS KRKHNQYSSD EDDEEEEVEV EETNQENINN ELLSLVETQK 120 KETEVTTTVT NPRKRAKKEK VVTSGIRAST NSNSLKDMLE EFMKQTIKMD KEWRDAWEMK 180 ERERERRERE WRRRMEELEE ERAAAERRWM EREEERRLRE EARALKRDAL IDALLNKLNR 240 DHDHHDHHQG F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00481 | DAP | Transfer from AT5G01380 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA19G00371 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195758.1 | 1e-105 | Homeodomain-like superfamily protein | ||||
Swissprot | Q9SDW0 | 1e-107 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A178UAE8 | 1e-104 | A0A178UAE8_ARATH; Uncharacterized protein | ||||
TrEMBL | M4EJD3 | 1e-105 | M4EJD3_BRARP; Uncharacterized protein | ||||
STRING | AT5G01380.1 | 1e-105 | (Arabidopsis thaliana) | ||||
STRING | Bra028899.1-P | 1e-106 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 8e-80 | Trihelix family protein |