PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00056
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CO-like
Protein Properties Length: 316aa    MW: 34715.6 Da    PI: 6.1738
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-07436436
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                + C+ +++  +  +C+++  +lC +C +++H  
  AA12G00056  4 KLCDSCKSATAAVYCRSDAAFLCLSCDSKIHAA 36
                68*****************************54 PP
2zf-B_box28.33.7e-094691342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  AA12G00056 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPI 91
                689*****************************66899999*99997 PP
3CCT69.77.3e-24249292144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  AA12G00056 249 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 292
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.3E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424148IPR000315B-box-type zinc finger
PfamPF006432.9E-5443IPR000315B-box-type zinc finger
CDDcd000213.77E-8548No hitNo description
PROSITE profilePS5011910.9934491IPR000315B-box-type zinc finger
PfamPF006431.4E-74691IPR000315B-box-type zinc finger
CDDcd000212.66E-94791No hitNo description
SMARTSM003362.8E-114991IPR000315B-box-type zinc finger
PfamPF062035.8E-18249291IPR010402CCT domain
PROSITE profilePS5101716.767249291IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASKLCDSCK SATAAVYCRS DAAFLCLSCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP ITPFYDVVSG VGTNTTKHSA VNFLDDCYFS  120
EIDGNGNGNG NREEEEEEAA SWLLPNPKTA MISPEEGDDS PEVNTGQYLF TDSDPYLDLD  180
YGSVDPKMET QDQQNSSGTD GVVPVGNRTV QIPTVNENCY DLDFSGGSKG GFTYGYSHSR  240
AVPLSPAERE ARVMRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTEAGESNEV  300
VGRGGMFGGF GLVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA12G00056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394745.21e-173LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-172COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1J3JTP11e-173A0A1J3JTP1_NOCCA; Zinc finger protein CONSTANS-LIKE 4
STRINGA0A087GD111e-171(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-161CONSTANS-like 4