PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44677.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 437aa    MW: 48587.4 Da    PI: 5.4359
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44677.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06839435
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                  C+ ++e e+ lfC+ +   lC  C ++ H 
  KFK44677.1  8 VSCDFCGEREAVLFCRADTAKLCLPCDQQVHT 39
                68******99******************9994 PP
2CCT65.91.2e-22388432145
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                 R  a++RYkeKrktR+++K+irYesRKa+Ae+R RvKGrFvk++e
  KFK44677.1 388 RGDAMQRYKEKRKTRRYDKTIRYESRKARAETRLRVKGRFVKASE 432
                 6789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.983552IPR000315B-box-type zinc finger
SMARTSM003364.9E-14552IPR000315B-box-type zinc finger
CDDcd000211.87E-8852No hitNo description
CDDcd000211.49E-65281No hitNo description
PfamPF062037.5E-17388430IPR010402CCT domain
PROSITE profilePS5101714.872388430IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSSSEKRVSC DFCGEREAVL FCRADTAKLC LPCDQQVHTA NLLSKKHVRS QICDNCCNEP  60
VSVRCFTDNL VLCQECDWDV HGSCSVSDAH VRSAVEGFSG CPSALELAAL WGIDLEGRKE  120
EENQVPMMMM MMMENFGMQL DSWVSGSNVV QELIVPNERK FKKRSSSSCG RYKQVLCKQL  180
EELLKSDVVV GGGDVDDGDC VREGDDCDGD GDGGEGEGIM VPEMPERLGW RRDVEEVNGG  240
EGVIQQPITT TLQWNDTTNR SGGQITQIWD FNLGQSREPE DTSRMEAAYV TKGAASFTIN  300
NFVDVMNESC STNAKGVKEI CKGDHNRSTA GQKPTISEGN KNPVTFGSEK GSNSSTDLRF  360
TEHTTGTSCK TTRLVATKAD LERLAQNRGD AMQRYKEKRK TRRYDKTIRY ESRKARAETR  420
LRVKGRFVKA SEAPYPY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372061e-172AY037206.1 Arabidopsis thaliana At1g28050/F13K9_15 mRNA, complete cds.
GenBankBT0026811e-172BT002681.1 Arabidopsis thaliana At1g28050/F13K9_15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893503.10.0zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E80.0COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A087HRC50.0A0A087HRC5_ARAAL; Uncharacterized protein
STRINGA0A087HRC50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]