PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44524.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 407aa    MW: 46132.7 Da    PI: 4.9982
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44524.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-081356340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + + +++++C  ++ +lC++C    H+       H++v
  KFK44524.1 13 ARACDSCVKRRARWYCAADDAFLCQSCDGLVHSAnplarrHERV 56
                578*************************9999557777778776 PP
2CCT68.51.8e-23349392144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  KFK44524.1 349 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 392
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-91158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5941158IPR000315B-box-type zinc finger
PfamPF006431.1E-61356IPR000315B-box-type zinc finger
CDDcd000214.67E-91458No hitNo description
PfamPF062035.3E-18349391IPR010402CCT domain
PROSITE profilePS5101716.083349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MKSLANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD GLVHSANPLA RRHERVRLKS  60
ASPAVAKHSN HEAATWHHGF TRKARTPRGG SGKKNHQSVF HDLVPEISVE DQTETDSYEL  120
EEQLICQVPV LDPMVAEQFL TDVVEPKIEF PMMRMIDDLE EEDNVVESCL NGFFPTDMEL  180
EEFAADVETL LGRGLDNESY VMEELGLSNS EMFKIEKDED EEEDESKAMN METFDENKTV  240
AFELTFDYES HKTCEEEVIK SVERSSNECI KVKEEEQKNV LMLRLNYDSV ISTWGGQGPP  300
WSPGERPELD IDIINTWPSV SMGENGGESH QKPFVGGCLP SSGFGDGGRE ARVSRYREKR  360
RTRLFSKKIR YEVRKLNAEK RPRMKGRFVK RSSLGVSAAN SPLRVNY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359375RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44524.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711556.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A087HQX20.0A0A087HQX2_ARAAL; Uncharacterized protein
STRINGA0A087HQX20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]