PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK43895.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

STAT

Protein Properties

Length: 1147aa MW: 130620 Da PI: 5.8312

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK43895.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	187.3	1.9e-58	693	808	1	115
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypfl 98 l+vvl+na+gqpv+kdv+vvasLlyadsg++vek++d+e+pLL+sy+G+ef++ed+p++ll+G+ sfklkisqLssk+d+rLf+ikfeip++k ypfl KFK43895.1 693 LEVVLSNAIGQPVHKDVKVVASLLYADSGTPVEKANDSEPPLLVSYEGIEFAAEDKPCNLLNGCVSFKLKISQLSSKSDKRLFCIKFEIPEVKGyYPFL 791 79*****************************************************************************************978* PP STAT 99 eavskpirCisrsrntr 115 e+v+++irCisr+ ++ KFK43895.1 792 ETVTNQIRCISRKCDSV 808 ************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49899	1.0E-7	497	636	IPR013320	Concanavalin A-like lectin/glucanase domain
CDD	cd10338	6.05E-65	1042	1147	No hit	No description
Gene3D	G3DSA:3.30.505.10	3.4E-7	1049	1106	IPR000980	SH2 domain
SuperFamily	SSF55550	2.7E-10	1050	1138	IPR000980	SH2 domain
PROSITE profile	PS50001	9.93	1053	1147	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 1147 aa Download sequence Send to blast
MRNDSLRVAI ESWNQCNEVG EEAKNMGSPR MADCFDLDYS SSPVKINHKV DEKDNKLGVR 60 NGTYGGINAG DNVDTYAAQK EIYLGNKCQV MDSPNPWQFW MIMLKNGNTD TLAAICPENG 120 KKAKPFPRTG RFPCFGKGCM NMPSMHHEYT SFVDQEHMSG SFYGTWDLDS DVEDGSVVGN 180 NSYYKVKWEK KIGGNESWVF HHLLKTSSKY PWLMLYLRAD ATRGFSGGYH YDTRGMMKMS 240 LKSPNFKVTF KLEILKGGGS GSQFYLMDMG SCWKNDGRDC DGDVTTDVTR YSEMIINPES 300 TAVCNRNHLN ACPPYHAFPN GTKVDRRDKE RFPYEAYHYY CVPGNARFAE TPYDVCDPYS 360 NPQPQEILQI LPHSVWEEFG YPTKKGQGWI GDPRSWELDV GKLSQTLHFY QDPGTKPVER 420 HWSSIDLGTE IYMSKNQIAE WTVTDFDIVI PKTVFSFLLW VLRVQVLEMA SDCAINTDKY 480 CLLEDFNVDV QVENHEFETF SLCFWVYLLD STTYPCTIIR QVHSDMCVSA PFLVLDENKK 540 MMLLPLTLLH QEAPDPVNIS SWTEVPNVST KAEFPLQKWL HVGCQVSRNY MRLYICGEIV 600 GEQVLTSLMT NGTNSDCAQK ISLFSVGGDG YSVQGFIHGA QVLPSSLPVN YHYTKDPPLW 660 LSVENPSTSG IELDKDGVWN IVGGKAHRKI FSLEVVLSNA IGQPVHKDVK VVASLLYADS 720 GTPVEKANDS EPPLLVSYEG IEFAAEDKPC NLLNGCVSFK LKISQLSSKS DKRLFCIKFE 780 IPEVKGYYPF LETVTNQIRC ISRKCDSVTP KRLNHIDYPL DGREPEIASS NGTSDILHSS 840 SSTKRIRLGE EKIFESEFEN GNGTSMEWRH QNQDEEEDNS STDSENAQVR DSTAFRRYTI 900 SDSTIFRYCL GNLTERSLLL KEITNNSSDE QVSEFADQVC LYSGCSHHSY QIKMARKLIA 960 EGTNAWILIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL THQDFELLRR ICGCYEYITQ 1020 ENFEKMWCWL FPVASAISRG LINGMWRSSS PKWIEGFVTK EEAEHSLQCQ EPGTFILRFP 1080 TSRSWPHPDS GSLVVTYVGR DFLIHHRLLK IDHICDSSER YKDAKPLQDM LLAEPELSRL 1140 GRIIRSI

Sequence ? help Back to Top

Protein Sequence Length: 1147 aa Download sequence Send to blast

MRNDSLRVAI ESWNQCNEVG EEAKNMGSPR MADCFDLDYS SSPVKINHKV DEKDNKLGVR  60
NGTYGGINAG DNVDTYAAQK EIYLGNKCQV MDSPNPWQFW MIMLKNGNTD TLAAICPENG  120
KKAKPFPRTG RFPCFGKGCM NMPSMHHEYT SFVDQEHMSG SFYGTWDLDS DVEDGSVVGN  180
NSYYKVKWEK KIGGNESWVF HHLLKTSSKY PWLMLYLRAD ATRGFSGGYH YDTRGMMKMS  240
LKSPNFKVTF KLEILKGGGS GSQFYLMDMG SCWKNDGRDC DGDVTTDVTR YSEMIINPES  300
TAVCNRNHLN ACPPYHAFPN GTKVDRRDKE RFPYEAYHYY CVPGNARFAE TPYDVCDPYS  360
NPQPQEILQI LPHSVWEEFG YPTKKGQGWI GDPRSWELDV GKLSQTLHFY QDPGTKPVER  420
HWSSIDLGTE IYMSKNQIAE WTVTDFDIVI PKTVFSFLLW VLRVQVLEMA SDCAINTDKY  480
CLLEDFNVDV QVENHEFETF SLCFWVYLLD STTYPCTIIR QVHSDMCVSA PFLVLDENKK  540
MMLLPLTLLH QEAPDPVNIS SWTEVPNVST KAEFPLQKWL HVGCQVSRNY MRLYICGEIV  600
GEQVLTSLMT NGTNSDCAQK ISLFSVGGDG YSVQGFIHGA QVLPSSLPVN YHYTKDPPLW  660
LSVENPSTSG IELDKDGVWN IVGGKAHRKI FSLEVVLSNA IGQPVHKDVK VVASLLYADS  720
GTPVEKANDS EPPLLVSYEG IEFAAEDKPC NLLNGCVSFK LKISQLSSKS DKRLFCIKFE  780
IPEVKGYYPF LETVTNQIRC ISRKCDSVTP KRLNHIDYPL DGREPEIASS NGTSDILHSS  840
SSTKRIRLGE EKIFESEFEN GNGTSMEWRH QNQDEEEDNS STDSENAQVR DSTAFRRYTI  900
SDSTIFRYCL GNLTERSLLL KEITNNSSDE QVSEFADQVC LYSGCSHHSY QIKMARKLIA  960
EGTNAWILIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL THQDFELLRR ICGCYEYITQ  1020
ENFEKMWCWL FPVASAISRG LINGMWRSSS PKWIEGFVTK EEAEHSLQCQ EPGTFILRFP  1080
TSRSWPHPDS GSLVVTYVGR DFLIHHRLLK IDHICDSSER YKDAKPLQDM LLAEPELSRL  1140
GRIIRSI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK43895.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118631	0.0	AK118631.1 Arabidopsis thaliana At1g17030 mRNA for unknown protein, complete cds, clone: RAFL19-90-A12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024008335.1	0.0	SH2 domain-containing protein A
Swissprot	B5X561	0.0	SHA_ARATH; SH2 domain-containing protein A
TrEMBL	A0A087HP43	0.0	A0A087HP43_ARAAL; Uncharacterized protein
STRING	A0A087HP43	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5205	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	0.0	SH2 domain protein A

Publications ? help Back to Top
Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG A new family of transcription factors. Development, 2008. 135(18): p. 3093-101 [PMID:18701541]