PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41987.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SRS

Protein Properties

Length: 353aa MW: 39008.3 Da PI: 6.9078

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41987.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.3	1.2e-69	116	287	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel................kskkqs 84 r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +ql+++++++a+s++++++kr re s KFK41987.1 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLSSLQHHSASSRETQNAKRLREAsggggggdnddnedhsGGGGGS 214 7899***********************************************************9888888888888899999888877655556778 PP DUF702 85 alsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 al +t++++a+s++ le s+ lP+ev+s+avfrcvrvss++d +e+e+aYqtav+igGhvfkGiLydqG+++ KFK41987.1 215 ALGNTRVVNANSNSGLELSQhLPPEVNSPAVFRCVRVSSIEDdeDEQEYAYQTAVNIGGHVFKGILYDQGPDQ 287 999********998766***************99434456*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.4E-64	119	286	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.4E-28	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.3E-27	235	285	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MAGFFYLGGR DNNNKQDHHH QVDKDHHQHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ 60 QQEEQQQQHV SAPTNFYSFG MVPSGSSSNN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM 120 NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL SSLQHHSASS 180 RETQNAKRLR EASGGGGGGD NDDNEDHSGG GGGSALGNTR VVNANSNSGL ELSQHLPPEV 240 NSPAVFRCVR VSSIEDDEDE QEYAYQTAVN IGGHVFKGIL YDQGPDQDHH HHHLNLLAST 300 ATTTTNAGET ANKTAVTVAG NNNNGLILDP SSLYPAQLNS FIAGTPFFTP PRS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MAGFFYLGGR DNNNKQDHHH QVDKDHHQHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ  60
QQEEQQQQHV SAPTNFYSFG MVPSGSSSNN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL SSLQHHSASS  180
RETQNAKRLR EASGGGGGGD NDDNEDHSGG GGGSALGNTR VVNANSNSGL ELSQHLPPEV  240
NSPAVFRCVR VSSIEDDEDE QEYAYQTAVN IGGHVFKGIL YDQGPDQDHH HHHLNLLAST  300
ATTTTNAGET ANKTAVTVAG NNNNGLILDP SSLYPAQLNS FIAGTPFFTP PRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41987.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002889030.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	0.0	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A087HIN5	0.0	A0A087HIN5_ARAAL; Uncharacterized protein
STRING	A0A087HIN5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-151	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]