PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38386.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 406aa    MW: 46981.7 Da    PI: 8.4555
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38386.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.73.2e-23100196185
    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt+ +v+ Li a+ +++++++++            +kk++W++vsk+m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++  +++ +
  KFK38386.1 100 KWTDTMVRFLIMAVFYIGDESNDQTetkkktttgmlQKKGKWKSVSKAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVVENQGLLETM 196
                 7**************999999976556678889999*********************************************9889999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2098223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDSNVMFSGF SPRLLSLEIP QNPQNPVQFQ HQHPYPTTTD QQTQPPSQQP IFPYPSKPKQ  60
LSPISDDDRG SGSGSGCNPE DSTGTNGKRK FSQSQWHRMK WTDTMVRFLI MAVFYIGDES  120
NDQTETKKKT TTGMLQKKGK WKSVSKAMVE KGFSVSPQQC EDKFNDLNKR YKRVNDILGK  180
GIACRVVENQ GLLETMVNVT PKLKNEVRKL LNSKHLFFRE MCAYHNSCGH GHGHGHGHNN  240
NNTGEQQQPP PQQNQTQTQH GAESEEEEEE EESESESETE EEQEEKNKKR GVVSDSVKRI  300
REEALRVVED VGKSVWEKKE WLRKRALEIE EKRVGYEWKA VEMEKQRVKW MRYRSKKERE  360
MEKAKLENTR RRLETERMVL MLRRSEIELT EGDVLGKRVD PSLATG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0109271e-89AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankAY0910281e-89AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds.
GenBankCP0026861e-89CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299896.10.0uncharacterized protein LOC17891806
TrEMBLA0A087H8D40.0A0A087H8D4_ARAAL; Uncharacterized protein
STRINGA0A087H8D40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-99sequence-specific DNA binding transcription factors