PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK32611.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 305aa    MW: 33375.3 Da    PI: 6.5056
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK32611.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.91e-08446339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 r C+ +++  + lfC  +  +lC +C  ++H        H++
  KFK32611.1  4 SRLCDSCKSTAAMLFCSADAAFLCGECDGKIHTAnklasrHER 46
                689******99*********************55666767765 PP
2zf-B_box27.47.1e-094792342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 + C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  KFK32611.1 47 VWLCEVCEQAPAHVTCKADAASLCVTCDRDIHSAnplsrrHERVPV 92
                689*****************************66899999*99986 PP
3CCT69.49.2e-24239282144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+k++
  KFK32611.1 239 REARVMRYREKRKNRRFEKTIRYASRKAYAEMRPRIKGRFAKRT 282
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.395249IPR000315B-box-type zinc finger
PfamPF006431.1E-6446IPR000315B-box-type zinc finger
CDDcd000211.49E-7549No hitNo description
PROSITE profilePS5011910.8084592IPR000315B-box-type zinc finger
PfamPF006436.0E-74792IPR000315B-box-type zinc finger
CDDcd000211.01E-94892No hitNo description
SMARTSM003361.3E-105092IPR000315B-box-type zinc finger
PROSITE profilePS5101716.777239281IPR010402CCT domain
PfamPF062031.6E-17239281IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSSRLCDSC KSTAAMLFCS ADAAFLCGEC DGKIHTANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAASLC VTCDRDIHSA NPLSRRHERV PVTPFYENAP GSSSSVNFLD EDADVSIEAA  120
SWLLPKEGGG VEIPNLFSDL DYSVVDPKME ASEENSSGND GVVPVQIKRS NHFLNEDYFN  180
FDISASKSTF PIGFTFINQT VSSTSVDVAL VPEGGRVTTE ISNATTTVTP AVQLSPAERE  240
ARVMRYREKR KNRRFEKTIR YASRKAYAEM RPRIKGRFAK RTDSSRGDNG GDVGVYGGFG  300
VVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK32611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405043.11e-177zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-154COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A087GRV90.0A0A087GRV9_ARAAL; Uncharacterized protein
STRINGA0A087GRV90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-156CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]