PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK31035.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 378aa    MW: 42286.1 Da    PI: 7.2269
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK31035.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-065192339
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                 ++C+++++++++  C++ +  lC++C    H +     H++
  KFK31035.1 51 SQICDNCSKEPVSVRCFSENLVLCQECDWDVHGScssivHNR 92
                689************************999894477777765 PP
2CCT58.91.7e-20333376144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 R++a++RYkeK+k+R++eK+irYe+RKa A+ R Rv+GrF+k++
  KFK31035.1 333 RDNAMQRYKEKKKNRRYEKTIRYETRKAKADIRLRVRGRFAKAT 376
                 899**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769653IPR000315B-box-type zinc finger
SMARTSM003364.5E-10653IPR000315B-box-type zinc finger
CDDcd000213.55E-6941No hitNo description
PROSITE profilePS501198.5744995IPR000315B-box-type zinc finger
CDDcd000215.86E-65382No hitNo description
PROSITE profilePS5101714.555333375IPR010402CCT domain
PfamPF062035.6E-15333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVMSSSETVL CDFCSERTAV LFCRADTAKL CLHCDHHVHS ANTLSRKHVR SQICDNCSKE  60
PVSVRCFSEN LVLCQECDWD VHGSCSSIVH NRSAVEGFSG CPSVTELAGV WGIDLEGKKK  120
EEEEDEFAEL QLDPWSSGSI IVQDLIVPYD MSIKKQSPSL GRYKQVVYKQ LEELLKSGDD  180
GGSVTEQSPT TSFTSLLMQY QSPCGNATNH ASGQTTQIWD FNLGQSRNSK EPSPVERSTF  240
SFNNSADLKN HTCPTNVKAF TETYQNDSFN SISAKGQATS KSNNLPAAMD SQKTSNNSND  300
LHFSEHVSMT SSRTIRLVVA ATDADLERMA QNRDNAMQRY KEKKKNRRYE KTIRYETRKA  360
KADIRLRVRG RFAKATDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK31035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_973589.10.0B-box type zinc finger protein with CCT domain-containing protein
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A087GMD30.0A0A087GMD3_ARAAL; Uncharacterized protein
STRINGA0A087GMD30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-170B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]