PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28713.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 205aa    MW: 22814.2 Da    PI: 4.9912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28713.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-06961321455
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++ +++  L++l+ +      +K + a++L  A+eYIk Lq
  KFK28713.1  96 EKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 132
                 67789999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.94482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.004791137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1193139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-694135No hitNo description
Gene3DG3DSA:4.10.280.101.3E-996135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTGKFETAGV CTGAWWSSSN DIISGYSLPC STELFVDIGG FEWQNIETVD AKTYNESHFN  60
TSTFLGNTNL DSTSQIYLST QTNFDKDERL NSVRKEKLGD RITALQQLVS PFGKTDTASV  120
LHDAIEYIKF LQEQITVSCN PHLSSRGSGE QMKQCSRTSV NNTHGQDYSP RQDLRSRGLC  180
LMPISSTFST SPPHLDTSSF WDLPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28713.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0653623e-88AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBankAY1229373e-88AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471644.13e-53PREDICTED: transcription factor bHLH103
SwissprotQ8VZ223e-54BH103_ARATH; Transcription factor bHLH103
TrEMBLA0A087GFR11e-151A0A087GFR1_ARAAL; Uncharacterized protein
STRINGA0A087GFR11e-152(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-56bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]