PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK28021.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 369aa MW: 39250.1 Da PI: 7.6719

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK28021.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	68	127	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+s++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s KFK28021.1 68 DHPQKCPRCESSHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 127 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	56	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	69	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MGLTSLQVCM DSDWLQEAES SGGSMLDSTS PSAADILAAC GTRPQASAVA VAAAALMDGG 60 RRLRPPHDHP QKCPRCESSH TKFCYYNNYS LSQPRYFCKT CRRYWTKGGT LRNIPVGGGC 120 RKNKKPSSSN SSSSTSSGKK PSNIVTTNTN DLMALAHSHQ NYQNASLGFS HFGGMMGSYS 180 TPEHSNVGFL ESKYGGLLSQ SPRPIDFLDS KFDLMGVNND NMVMVDHGSN GDHHHNHHMG 240 MNHGLGLNNN NNGGFHGISP GGNGNDGGGG FMDISTYQRL MLSNYNDHHH EDHQRVTTIM 300 DVKPNPKLLS LDWQQDQGYS DGNGNGGGGK SDGAGAGGYG GGGYINGLGS SWNGLMNGYG 360 SSTKANSLV

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MGLTSLQVCM DSDWLQEAES SGGSMLDSTS PSAADILAAC GTRPQASAVA VAAAALMDGG  60
RRLRPPHDHP QKCPRCESSH TKFCYYNNYS LSQPRYFCKT CRRYWTKGGT LRNIPVGGGC  120
RKNKKPSSSN SSSSTSSGKK PSNIVTTNTN DLMALAHSHQ NYQNASLGFS HFGGMMGSYS  180
TPEHSNVGFL ESKYGGLLSQ SPRPIDFLDS KFDLMGVNND NMVMVDHGSN GDHHHNHHMG  240
MNHGLGLNNN NNGGFHGISP GGNGNDGGGG FMDISTYQRL MLSNYNDHHH EDHQRVTTIM  300
DVKPNPKLLS LDWQQDQGYS DGNGNGGGGK SDGAGAGGYG GGGYINGLGS SWNGLMNGYG  360
SSTKANSLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK28021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT020467	0.0	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	0.0	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866523.1	1e-178	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	1e-166	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A087GDR9	0.0	A0A087GDR9_ARAAL; Uncharacterized protein
STRING	A0A087GDR9	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-155	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]