PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27763.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 352aa    MW: 38323.6 Da    PI: 5.6609
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27763.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.3e-07436436
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                + C+ +++  + l+C+ +  +lC +C +++H  
  KFK27763.1  4 KLCDSCKSATAALYCRPDAAFLCLSCDSKIHAA 36
                58*****************************54 PP
2zf-B_box27.56.6e-094691342
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  KFK27763.1 46 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                689*****************************66899999*99986 PP
3CCT68.32.1e-23285328144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Re +++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  KFK27763.1 285 RELRVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 328
                 899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.352148IPR000315B-box-type zinc finger
PfamPF006432.3E-5443IPR000315B-box-type zinc finger
CDDcd000211.04E-8548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006433.3E-74691IPR000315B-box-type zinc finger
CDDcd000218.03E-104791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PfamPF062032.1E-17285327IPR010402CCT domain
PROSITE profilePS5101716.42285327IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASKLCDSCK SATAALYCRP DAAFLCLSCD SKIHAANKLA SRHARVWMCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDTVSG TVKHTAVNSL DDCYFSDLDG  120
NGSREEEEEE AASWLLLPNP KTTVVATAAE TVPGDSPEMN TGQQYLFSDP DPYLDLDYGT  180
VDPKVEAQEQ NSSGTDGVVP VENRTVRIPT VNENCYELDF TGGSKGFTYG YNCISHSQVS  240
SSSLEVGVVP DGGSVADVSY PYGGPATSGT DPGTQRAVPL TSAERELRVM RYREKRKNRK  300
FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NENNDVGSHG GIFGGFGLVP TF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27763.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937570.0AB493757.1 Arabidopsis thaliana At5g24930 mRNA for hypothetical protein, partial cds, clone: RAAt5g24930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197875.30.0zinc finger CONSTANS-like protein
SwissprotQ940T90.0COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A087GD110.0A0A087GD11_ARAAL; Uncharacterized protein
STRINGA0A087GD110.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.10.0CONSTANS-like 4