PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK23130.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family CO-like
Protein Properties Length: 332aa    MW: 36925.8 Da    PI: 5.6409
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK23130.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.84e-07245340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                e++C+ ++ +++  +C++++  lC +C    H+       Ht++
  KFK23130.1  2 ETRCDYCGTERALVYCKSDSAKLCLNCDICVHSAnpvslkHTRS 45
                689*****************************668888888875 PP
2CCT58.72e-20277319143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R++a++RY +K+++R F K+irY+sRKa+A++R RvKGrFvk 
  KFK23130.1 277 RDEAKKRYTQKKSKRMFGKQIRYASRKARADTRMRVKGRFVKT 319
                 99***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.8E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
PfamPF006434.3E-5245IPR000315B-box-type zinc finger
CDDcd000211.54E-6347No hitNo description
PROSITE profilePS5101713.949277319IPR010402CCT domain
PfamPF062034.0E-16277319IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
METRCDYCGT ERALVYCKSD SAKLCLNCDI CVHSANPVSL KHTRSLLCEK CFLQPALFHC  60
LNEKVSLCQE CHWTASNCLG LGHRLQCLDP YSGSPSSKDF AKIWSSILEP SVTNWVSPFD  120
DCTKMELEDW DGLSTSTVTH TQNQKDHSSF ALMESNLPNV IVKECSGLNL CEEINLDDAP  180
LNFNASDDII GISSSDHTKC YQSNEESLEV EKNIGLPSLL LPALSGNVVP SLSVSMSNIT  240
GESGANDYQD CGISPGFLIG DSPWESSLEV SFNPKLRDEA KKRYTQKKSK RMFGKQIRYA  300
SRKARADTRM RVKGRFVKTG ETIEYDPSLI MN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK23130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868216.10.0putative zinc finger protein CONSTANS-LIKE 11
RefseqXP_020872286.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233791e-175COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A087FZS80.0A0A087FZS8_ARAAL; Uncharacterized protein
STRINGA0A087FZS80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.11e-169B-box type zinc finger protein with CCT domain