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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
ZF-HD |
Protein Properties |
Length: 245aa MW: 27166.7 Da PI: 8.8843 |
Description |
ZF-HD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | ZF-HD_dimer | 104.3 | 7.9e-33 | 56 | 113 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
+ vrYkeClkNhAa++Gg+a+DGCgEfmps+g+egt++alkC+AC+CHRnFHR+e e+
snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 56 KVVRYKECLKNHAATIGGNATDGCGEFMPSTGDEGTIEALKCSACNCHRNFHRKEIES 113
679****************************************************986 PP
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2 | Homeobox | 17.4 | 7.4e-06 | 177 | 234 | 1 | 54 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRak 54
+r Rt+ftkeq e + ++ e k +++ +++ ++ +++g++ r+ kvW +N + k
snap_masked-scaffold17188-abinit-gene-0.2-mRNA-1 177 KRFRTKFTKEQKEKMLSFAEkagwKMQKLEESTVQQFCQETGIKRRVLKVWMHNNKHK 234
789***********98766577778*****************************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MNSSTQKGEM PFSRSCIHAG GNGHVVPYSE SQPSKSNSAD PPCPSPTLED HRPHKKVVRY 60 KECLKNHAAT IGGNATDGCG EFMPSTGDEG TIEALKCSAC NCHRNFHRKE IESHCSSQCY 120 HTPLILNNAI LGSPIGYPAN SLIVSYKSGS VPSESDEKDD DDDGCGVVAR PAEKVRKRFR 180 TKFTKEQKEK MLSFAEKAGW KMQKLEESTV QQFCQETGIK RRVLKVWMHN NKHKFALKKK 240 TPPAS
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Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM462067 | 9e-43 | AM462067.2 Vitis vinifera contig VV78X194955.8, whole genome shotgun sequence. |