PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold16511-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 309aa    MW: 34795.6 Da    PI: 8.656
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold16511-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY887.9e-282985259
                                                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                                                      +DgynWrKYG+K vkg+e+prsYY+Ct  gC+v+k ve+s   +++ +i+Yeg+Hnhe
  snap_masked-scaffold16511-abinit-gene-0.5-mRNA-1 29 NDGYNWRKYGKKLVKGNEYPRSYYKCTCVGCNVRKWVEQSP-AGEISKIKYEGKHNHE 85
                                                      8****************************************.9**************8 PP
2WRKY88.65.4e-28163220260
                                                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                                              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                                       +Dgy+W KYGqK+v+ +e+prsYY+Ct+++Cp+kkkvers+  +++++i+Y+g+Hnh+k
  snap_masked-scaffold16511-abinit-gene-0.5-mRNA-1 163 NDGYKWHKYGQKNVHVNEYPRSYYKCTYSSCPAKKKVERSH-AGHITKIVYKGTHNHPK 220
                                                       8****************************************.9**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182905.75E-232487IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-242887IPR003657WRKY domain
SMARTSM007743.4E-272886IPR003657WRKY domain
PROSITE profilePS5081123.9382987IPR003657WRKY domain
PfamPF031066.1E-212985IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-24157221IPR003657WRKY domain
PROSITE profilePS5081121.241157221IPR003657WRKY domain
SuperFamilySSF1182906.54E-22160221IPR003657WRKY domain
SMARTSM007741.5E-26162220IPR003657WRKY domain
PfamPF031062.1E-22163219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESSKASHSD KKYQDSEPTI VVANPFKSND GYNWRKYGKK LVKGNEYPRS YYKCTCVGCN  60
VRKWVEQSPA GEISKIKYEG KHNHEMPNKL AKEISDLQCL AENMNIRSQL ETASLVPEKD  120
QESTAFTLTK SDCEEEGVAE TREEVSYSDR TYQPSIAVDK PTNDGYKWHK YGQKNVHVNE  180
YPRSYYKCTY SSCPAKKKVE RSHAGHITKI VYKGTHNHPK PQPNIKCAKE GSDLSGNINS  240
QAKPDLGLQN QAGNRNKSSQ VVPAYTVPER DQESTQTALT RLTGSRGNEG EGDVQTIEEG  300
DGPNPKRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18292211877Probable WRKY transcription factor 4
2lex_A1e-18292211877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895005.11e-148disease resistance protein At4g27190-like
TrEMBLA0A2N9GQB01e-69A0A2N9GQB0_FAGSY; Uncharacterized protein
STRINGVIT_14s0108g01280.t012e-51(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-37WRKY DNA-binding protein 3