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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold15864-abinit-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 28077.5 Da PI: 9.9816 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 153 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr +k+ ++Wv+e r+p +k+ r++lg+f tae+Aa+a++ a +l+g snap_masked-scaffold15864-abinit-gene-0.2-mRNA-1 153 PVYRGVR-RKNAQKWVCEMREP---NKKSRIWLGTFPTAEMAARAHDVAVIALRG 203 68****9.6779******9998...347***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-12 | 153 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-19 | 154 | 213 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-29 | 154 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.877 | 154 | 211 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-26 | 154 | 217 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.77E-28 | 155 | 213 | No hit | No description |
PRINTS | PR00367 | 1.8E-7 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 177 | 193 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLNLCDICSI EFESSSAHML NLLDEKVMLK VMLASQNPMK RDGRKKFKET RHPVYLMGSD 60 ICSTEFESSS ACMLNLLDKE VMLASQNLKR RDGRNKFKET RHPVYLMGSD ICSTEFESSS 120 ARMLNLLDEE VMLASQNPKR RDGRKKFKET RHPVYRGVRR KNAQKWVCEM REPNKKSRIW 180 LGTFPTAEMA ARAHDVAVIA LRGQSGCLNF ADSKWRLPIP ASTTAKDIQR TAAEAAKEFR 240 PEKLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023898058.1 | 3e-84 | dehydration-responsive element-binding protein 1A-like | ||||
TrEMBL | A5HIK0 | 6e-68 | A5HIK0_BETPN; CBF/DREB1 transcription factor 1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 3e-56 | ERF family protein |