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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
LBD |
Protein Properties |
Length: 234aa MW: 25506.1 Da PI: 9.2183 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 134 | 6e-42 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61
+CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++sl
snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1 42 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSL 102
7************************************************************ PP
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100
vyeA+ r+rdPvyG++g i++lqqq+++l+ael+++++e
snap_masked-scaffold14478-abinit-gene-0.2-mRNA-1 103 VYEANLRLRDPVYGCMGAISALQQQIHSLQAELNSVRTE 141
**********************************99987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MSRDRERLDE IAKKIKRETD ATSQMGRRHL LGPSGTLNTI TPCAACKLLR RRCAEECPFS 60 PYFSPHEPHK FAAVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANLRL RDPVYGCMGA 120 ISALQQQIHS LQAELNSVRT EILKYKYREA TCSISSSSPA DLVPFGAVSI AAPQRTLRPP 180 PPTPPPPPPP PPVFSSPPIV VTSLSSSSST SFYIPPTSTT SYSSILSGNV SYFN
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