PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold12258-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 357aa    MW: 40515.1 Da    PI: 6.3611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold12258-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.7e-12198223126
                                                       --S---SGGGGTS--TTTTT-SS-SS CS
                                           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                       y   +C+++ +tG+C yGd+CkF+H+
  snap_masked-scaffold12258-abinit-gene-0.3-mRNA-1 198 YQPDICKDYKETGYCGYGDSCKFMHD 223
                                                       66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9196228IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878197225IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12198228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.1E-13267333IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.23E-12275319No hitNo description
PfamPF139201.2E-8275316No hitNo description
PROSITE profilePS5008910.232276314IPR001841Zinc finger, RING-type
SMARTSM001844.1E-4276313IPR001841Zinc finger, RING-type
CDDcd001621.38E-7276317No hitNo description
PROSITE patternPS005180291300IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNILDVFIGE SLMADSGENQ QPEQVCNFFR KPSRNKNIRK RTVDEDEEDD SKTEGSFLHS  60
QKKTIKPDNK LYFSTGSSKN KASAEAKEES EKPIFQFESS REIQVEHDSR ATATLETETD  120
FSRDARALRE RSLKQAEEAL KGKGKSSGDE KLYRGINGYT DYKAGFRREQ TVASEKAGGA  180
HGPLRASAHI RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQMEKEWDEA  240
EKVRKRNLAM GLDDEDDGGV DPGEEDDDDD SLPFACFICR QPFVDAVVTK CKHYFCEHCA  300
LKHHAKNKKC FVCNKPTLGI FNTAHEIRKR IAAEALKEEV SLSVSLFPRM SGKILFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-652333112317RING finger protein 113A
5z58_M1e-652333112317RING finger protein 113A
6ff4_t1e-652333112317RING finger protein 113A
6ff7_t1e-652333112317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908953.10.0zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-169C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2I4DUT40.0A0A2I4DUT4_JUGRE; zinc finger CCCH domain-containing protein 1-like isoform X2
STRINGXP_010103154.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-168C3H family protein