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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25989.8 Da PI: 4.9875 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.8e-18 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr+v+eIr p g+++r++lg+fg+ae+Aa+a++ a++ l+g snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1 56 QFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSAEMAARAYDSAALFLKG 105 69****887.**********8...557***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-30 | 56 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 56 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-19 | 56 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.692 | 56 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-28 | 56 | 114 | No hit | No description |
Pfam | PF00847 | 4.4E-11 | 57 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 57 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSVMPMGEDQ HEAPPDQNQL KPTHLESNSK TNKKRTAQKR QPEEEEAPPR RQRDNQFRGV 60 RKRRWGRYVS EIRLPGQKTR IWLGSFGSAE MAARAYDSAA LFLKGNLASL NFPDMAHSLP 120 RPESSSRRDI QSAAAKAALP LSENNPSVAS ASSSEEDDFW CGFDFDFDFD FDMCTTSSSF 180 QQVNNATGEA PPLFSPLRFD SVDLSQPQDL TGFLMPSPTD DELFLASYFH M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 55 | 113 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904679.1 | 1e-121 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A2N9EDW8 | 1e-62 | A0A2N9EDW8_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13756 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 8e-32 | ERF family protein |