 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
ERF |
Protein Properties |
Length: 231aa MW: 25989.8 Da PI: 4.9875 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1 | genome | THGP | View Nucleic Acid |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 56 | 9.8e-18 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+++GVr ++ +gr+v+eIr p g+++r++lg+fg+ae+Aa+a++ a++ l+g
snap_masked-scaffold09409-abinit-gene-0.3-mRNA-1 56 QFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSAEMAARAYDSAALFLKG 105
69****887.**********8...557***********************9988 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MSVMPMGEDQ HEAPPDQNQL KPTHLESNSK TNKKRTAQKR QPEEEEAPPR RQRDNQFRGV 60 RKRRWGRYVS EIRLPGQKTR IWLGSFGSAE MAARAYDSAA LFLKGNLASL NFPDMAHSLP 120 RPESSSRRDI QSAAAKAALP LSENNPSVAS ASSSEEDDFW CGFDFDFDFD FDMCTTSSSF 180 QQVNNATGEA PPLFSPLRFD SVDLSQPQDL TGFLMPSPTD DELFLASYFH M
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5wx9_A | 2e-13 | 55 | 113 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |