PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold09015-abinit-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 280aa    MW: 30838.3 Da    PI: 6.4271
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold09015-abinit-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1543.5e-1758117362
                                                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                                       + kr+rr+ +NRe+ArrsR+RK+a++ eLe+ v  L  e ++L k+l+e+++++ +  s+
  snap_masked-scaffold09015-abinit-gene-0.9-mRNA-1  58 DAKRARRMLSNRESARRSRRRKQAQMSELETQVGHLRVEHSTLSKRLSEMENKCGTSGSD 117
                                                       78***************************************************9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-1256112No hitNo description
SMARTSM003381.6E-1856120IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.19758110IPR004827Basic-leucine zipper domain
PfamPF001702.4E-1359112IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-1160111No hitNo description
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
PfamPF124982.9E-21128251IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVQIEADDGP FENPALPPLQ RRSEPQVIQA TSGSSRDDSD DDEFEGELEI TENMDPADAK  60
RARRMLSNRE SARRSRRRKQ AQMSELETQV GHLRVEHSTL SKRLSEMENK CGTSGSDNRI  120
LKAEIESMRA QVKMAEEQIK RVTGLHPLLL AMANIPGAGM PFVNNSPVHA STNASLPIPA  180
NLNHNQFFHQ PPVPTVGNSA PHPQRLDNSF ATDPLIPLMG NQHKDIGGSR VAEMSSVQHT  240
TGVQQVQKQI SPNTGSDGAM PGWDNELSRA VANNNQQNKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279RRSRRRKQ
27479SRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886712.11e-177light-inducible protein CPRF2-like isoform X1
TrEMBLA0A2N9F6181e-126A0A2N9F618_FAGSY; Uncharacterized protein
STRINGXP_010087124.13e-78(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136911825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.15e-32basic leucine zipper 25