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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 255aa MW: 28212.9 Da PI: 7.8957 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.3e-10 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 89 FKTKLCCKFRA-GTCPYVTNCNFAHS 113 69*********.*************8 PP | |||||||
2 | zf-CCCH | 19.2 | 2.2e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP | |||||||
3 | zf-CCCH | 42.9 | 8.2e-14 | 224 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1 224 WKTRICNKWELTGYCPFGSKCHFAHG 249 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.61E-8 | 86 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-14 | 86 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-9 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-8 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-15 | 219 | 250 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-9 | 221 | 249 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-9 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 223 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-11 | 224 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDFSGGNVVQ VITGSGPENW GVNDNAMWAT EDDYRAWNNN NGDDTPSNSN YDQRQSQSRS 60 GSEPPNKKSK NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF AHSIEELRRP 120 PPNWQEIVAQ HEEEKGVSSE PREEYQIPSL GSSNFVGDSQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGAA TSPVSGPNAK PSNWKTRICN KWELTGYCPF 240 GSKCHFAHGA AVPKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023923480.1 | 0.0 | zinc finger CCCH domain-containing protein 12 isoform X1 | ||||
Swissprot | Q9LQM3 | 2e-94 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2N9GAB3 | 1e-169 | A0A2N9GAB3_FAGSY; Uncharacterized protein | ||||
STRING | XP_010096556.1 | 1e-142 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 6e-97 | C3H family protein |