PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 112aa MW: 12680.7 Da PI: 10.6009

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold05307-abinit-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.3	1.3e-15	47	97	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr +++g+Wv+e+r+p++ + r++lg++ +++Aaka++ a+++l+ge snap_masked-scaffold05307-abinit-gene-0.4-mRNA-1 47 PVYKGVR--ERNGKWVCELRHPKK---KSRVWLGTWPCPDMAAKAYDVAALALKGE 97 68**6..679*****854...6***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.1E-9	47	97	IPR001471	AP2/ERF domain
SMART	SM00380	9.0E-23	48	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.2E-16	48	105	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.8E-26	48	105	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.006	48	104	IPR001471	AP2/ERF domain
CDD	cd00018	8.05E-25	49	106	No hit	No description
PRINTS	PR00367	4.7E-7	49	60	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.7E-7	86	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MALREGTSPT NSDIMYHQCT SHLKTQPQSG MQKRKAGRKK FQETRHPVYK GVRERNGKWV 60 CELRHPKKKS RVWLGTWPCP DMAAKAYDVA ALALKGESAS LNFPEAACVL PR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913339.1	2e-75	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	4e-33	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	4e-33	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A2N9G2V2	1e-59	A0A2N9G2V2_FAGSY; Uncharacterized protein
STRING	VIT_08s0007g03790.t01	1e-44	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	7e-26	C-repeat-binding factor 4

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]