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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TALE | ||||||||
Protein Properties | Length: 679aa MW: 73439.5 Da PI: 7.4291 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 378 | 410 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gLt +qV++WF N R + snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1 378 HPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 410 89*****************************88 PP | |||||||
2 | BELL | 94.8 | 7.6e-31 | 252 | 308 | 16 | 72 |
BELL 16 leeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + Vd+rY+qy++q+q+vissFe++aglgsa+ Yt+lAl++iS++FrcLkdai++qi snap_masked-scaffold04512-abinit-gene-0.7-mRNA-1 252 VRLVDQRYRQYHHQMQIVISSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQI 308 5679****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.7E-40 | 190 | 306 | IPR006563 | POX domain |
Pfam | PF07526 | 9.1E-6 | 195 | 235 | IPR006563 | POX domain |
Pfam | PF07526 | 3.0E-25 | 252 | 305 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 351 | 414 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-9 | 354 | 418 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.69E-12 | 354 | 415 | No hit | No description |
SuperFamily | SSF46689 | 8.98E-17 | 355 | 420 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 357 | 420 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.6E-18 | 371 | 410 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MATYFHGNSE IQAADGLQTL VLMNRGYVQY SDTPPPPPQS QSNNFVFLNS AAAAAAANSL 60 NLPHAPPPHT QQFVGIPLSN AGSAGDPASQ SMHAAHHEFS ALHGFAPRMQ YNLWNSIDPN 120 TAARETPRAQ QGLSLSLSSQ QPTGGGYGSF RSDRDVPPQA QGPAISGEEH MRVSAGGSPS 180 SASGVTNGVS GIQSVLLSSK YLKAAQDLLD EVVNVGNGIK SEISKKVNGK VIGESSVAVS 240 GDGSVGGEGS VVRLVDQRYR QYHHQMQIVI SSFEQAAGLG SARTYTALAL QTISKQFRCL 300 KDAITGQIRA ANKSLGEEDC LGGKIEGSRL KYVDHHLRQQ RALQQLGMIQ HNAWRPQRGL 360 PERSVSVLRA WLFDHFLHPY PKDSDKHMLA KQTGLTRSQV SNWFINARVR LWKPMVEEMY 420 LEELKEQEQN GSEDKTSKSN DDSASKSSAP QEKSSATENQ TRSFNSKQEN STNQNGAAIP 480 ISKASTSPVG GNMRNHSGFS LIGSSELEGI TQGSPKKPRS NDMLHSPNSV PSINMDVNMD 540 IKPNEANNEQ VSMKFGDERQ SRDGYSFMGS QTNFIGGFGQ YPIGEIGRFD AEQFAPRFSG 600 NGVSLTLGLP HCENLSLSGT HHTFLPNQSI QLGRRVDIGE PNEFGAINTS TPHSSAAYES 660 INIQNPKRFA AQLLPDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 8e-16 | 360 | 418 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 8e-16 | 360 | 418 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 6e-16 | 360 | 417 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 6e-16 | 360 | 417 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920159.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_023920160.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_023920161.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_023920162.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_023920164.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-173 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2N9GIG5 | 0.0 | A0A2N9GIG5_FAGSY; Uncharacterized protein | ||||
STRING | XP_007162972.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-123 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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