PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold03212-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 239aa    MW: 26510.8 Da    PI: 9.3529
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold03212-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.23.7e-23146190246
                                            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 
                                                        pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+
  snap_masked-scaffold03212-abinit-gene-0.14-mRNA-1 146 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 190
                                                        9*****************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-9143189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-19144190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-14146189IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRTTSTTPSP LPDLSLQISP PSVTVSADFE AKEVSYDGLI TRKAVLHSDR SSTTDSGSSG  60
SDLSHENGGF YPAGAYNLGL TEPTLSLGFE MSDLSPPYLL PRVHHQHHHH QHQHHHHHNH  120
QPQIYGREFK RNARLISGVK RSVRAPRMRW TTTLHAHFVH AVELLGGHER ATPKSVLELM  180
NVKDLTLAHM YRTVKSTDKG SGLGQTDIGL KQRPGLVNVE GVLPCEKDSP ITTLEKTQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914223.11e-134probable transcription factor KAN4
TrEMBLA0A2N9IX131e-111A0A2N9IX13_FAGSY; Uncharacterized protein
STRINGcassava4.1_011255m1e-99(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-45G2-like family protein