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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 151aa MW: 17135 Da PI: 9.485 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 62.4 | 7.3e-20 | 55 | 146 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE- CS
B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvlt 62
+p+++lk++ +++ +fa+++ g +k ++l+ +sg+ W ++++++ + +++
snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1 55 VIPAYSLKRNFVYVCPEFAKKYacG-----EKNVKLQASSGKWWPCQFCFKNDTTSpKTIG 110
5799******************543.....246*****************888888899** PP
TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
kGWk F+++ng+kegD++vF+l++r++ l+v+++r
snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1 111 KGWKPFARDNGIKEGDVCVFELINRMDVVLKVSIYR 146
*************************99999999987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 151 aa
Download sequence Send
to blast |
MSTPQELCVK EEVDTELIVI ENLPMSRRSV LSGGGERALQ AARMFKPKNP SFIRVIPAYS 60 LKRNFVYVCP EFAKKYACGE KNVKLQASSG KWWPCQFCFK NDTTSPKTIG KGWKPFARDN 120 GIKEGDVCVF ELINRMDVVL KVSIYRVAEY A
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 5e-20 | 21 | 150 | 18 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-20 | 21 | 150 | 18 | 145 | B3 domain-containing transcription factor VRN1 |