PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 868aa MW: 96813.9 Da PI: 4.7547 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.8 | 4.4e-12 | 48 | 86 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 dell +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 48 DELLRRAVEHYKGKSWKRIAECFK-DRTDVQCLHRWQKVL 86 89*********************9.************986 PP | |||||||
2 | Myb_DNA-binding | 62 | 1.2e-19 | 92 | 138 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa+ ++ gR +kqc++rw+++l snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 92 KGPWSKEEDEKIIELVNRYGSKKWSTIAEALP-GRIGKQCRERWHNHL 138 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.9 | 1.7e-16 | 144 | 186 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ snap_masked-scaffold02287-abinit-gene-0.13-mRNA-1 144 KEPWTEEEELALIRAHQIYGNK-WAELSKFLP-GRTDNAIKNHWN 186 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.6E-6 | 39 | 88 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.29 | 43 | 86 | IPR017930 | Myb domain |
CDD | cd00167 | 2.79E-9 | 48 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-15 | 48 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.5E-10 | 48 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.9E-11 | 48 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.882 | 87 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-32 | 89 | 185 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-18 | 91 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-16 | 94 | 138 | No hit | No description |
Pfam | PF13921 | 4.2E-19 | 95 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 97 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.516 | 143 | 193 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 143 | 191 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.99E-13 | 146 | 186 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 147 | 193 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MSRFSTTSCK RVRPPVNTAP RRETDASQKM RPIIGFFGLV VVYHDIRDEL LRRAVEHYKG 60 KSWKRIAECF KDRTDVQCLH RWQKVLNPEL FKGPWSKEED EKIIELVNRY GSKKWSTIAE 120 ALPGRIGKQC RERWHNHLNP NISKEPWTEE EELALIRAHQ IYGNKWAELS KFLPGRTDNA 180 IKNHWNSSVK KKLQSYLASG LLEQFQGLPY VGNPSSSSVG VQQCQADVFE DENSDCSQGS 240 IAVICSQFDS GTENATRNLR TEETVCRKGH NMEKYSFLEA ETPGHEDYHF SSHNPPNSFV 300 DDSQESSGFG TSEHSNYVNE SRDKHSILSR SSVGFNTSAT TENMNLLISE SDFFENAFSV 360 TRIPGFFFDG NVTEKSNNLD ARKNSVICQS DSQNSATTRI FAMESCDPLK DVPGGTSEFE 420 AITSSRDDFI YVDSPDIDVD EKDDPMKIDE VKNNPKLVPV DIFSAVVSDS MQKISSNDEN 480 AKQISKSDEA MVTSKLAPAD LFGSVNSDSM QLLPSMDENG ATAYKDGRGS GSLCYEPPCF 540 PSLDIPSLNF DPIASGGDIQ QAYSPLGIRQ LLMRPMNLSS PSSLWDSPSY KSTPEAILKN 600 AIDETKEDKK LGKDTNMKKF SLASPFSSLE SILDENGALA MSISSIEEML DCVVDQKVNT 660 AESMHDKANT DHAFEENKES IAKESRILEK DVGITNSLEK IKKSTLNIDP KANVDADTTF 720 IIPTGLLVEH NSDDQLVFSP DTDEHQTTRA LSMAILSPKG QYVIRLDTKS YQDDNIESSS 780 LKNEKCIVPA TSSECAPSLR PLETSGNYGN VADIQSFGMF DETPDRKRGI ESPSAWKSPW 840 FLGTFLPPRV DADMTLEPCG IIKLYTEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-64 | 48 | 193 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-64 | 48 | 193 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881221.1 | 0.0 | transcription factor MYB3R-1-like isoform X2 | ||||
TrEMBL | A0A2N9ITA2 | 0.0 | A0A2N9ITA2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_11s0016g03750.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-120 | myb domain protein 3r-4 |