PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold02060-abinit-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 206aa    MW: 23215.8 Da    PI: 10.1368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold02060-abinit-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.5e-202473255
                                                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  snap_masked-scaffold02060-abinit-gene-0.13-mRNA-1 24 HYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFETAESAALAYDEAALRFKG 73
                                                       7********.**********76....35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.9E-332382IPR001471AP2/ERF domain
CDDcd000181.68E-322482No hitNo description
PfamPF008471.8E-132473IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-222482IPR016177DNA-binding domain
SMARTSM003802.5E-362487IPR001471AP2/ERF domain
PROSITE profilePS5103224.5532481IPR001471AP2/ERF domain
PRINTSPR003679.7E-122536IPR001471AP2/ERF domain
PRINTSPR003679.7E-124763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSRLSLFYMV KQKHFCEGNT RRRHYRGVRQ RPWGKWAAEI RDPYKAARVW LGTFETAESA  60
ALAYDEAALR FKGSKAKLNF PERVQGTSET GYLTTGLGTE QVPNPTLHHA PHQALSQQTY  120
PNMFQYAQLL QTGDSNLHYV NVPSLYGQEG FASQTSSSTT SSSSSSSPIP TQQQQQYQQQ  180
ELLRFPTHFG GGSSTSSNPR KNKKDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-282385467ATERF1
3gcc_A3e-282385467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902256.11e-109ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH542e-43EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2N9FNJ42e-79A0A2N9FNJ4_FAGSY; Uncharacterized protein
STRINGVIT_17s0000g00200.t011e-54(Vitis vinifera)
STRINGEOX996131e-53(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]