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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 309aa MW: 34924.3 Da PI: 6.6505 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 101.2 | 6e-32 | 96 | 200 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEET CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkks 56
f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s
snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 96 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSS 155
89***************************966778999********************** PP
TEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
B3 57 gryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99
++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l++ ++r+
snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1 156 QSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGKDRLFIDWRRR 200
***************************666999999999999997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MDFGAHREGF CEEAEHMVMM RGKPPFSYSS SSSHDASDVK QQLEFMESSP RNEDDLDDVR 60 QNGLAPTGAV TGSGITSGTS SSTGMMMMMM EREHMFDKVV TPSDVGKLNR LVIPKQHAEK 120 YFPLDSSTNE KGLLLNFEDR NGKPWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS 180 FQRGVGELGK DRLFIDWRRR PDAPDPNLSL PLPLHHHHQF ASYHHQAWSP LLMRPPPRDR 240 CPISETDECD ILSSTTIAHT SMPSQPSTLL SSSSQSPLQL RLYNGTPLPT VPTDFLNKGK 300 ASMSFDFDI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-68 | 89 | 201 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-68 | 89 | 201 | 1 | 114 | B3 domain-containing transcription factor NGA1 |
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