PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 709aa    MW: 80228.9 Da    PI: 6.3688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.51.6e-1183317021374
                                               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 
                                                        l++lL+ cA+av+++d++ ++++L++++ ++sp gd mqR+a+yf+ +L+ar+a+s++++
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 331 LRTLLTICAQAVAANDQRTTNEVLKQIRLHSSPLGDGMQRMAHYFADGLEARIAGSGTQI 390
                                                        5789******************************************************** PP

                                               GRAS  61 ykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                                                        y al  + ts    +++l+a++lf  ++P+ k+s++  N++I++ +e+++r+Hi+Df+i 
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 391 YTALIGRLTS---AADVLKAYHLFLAACPYKKLSNFFSNKTIMNLAEKKTRLHIVDFGIL 447
                                                        ****999999...9********************************************** PP

                                               GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                                                        +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   + ++eetg+rL+k+Ae+++vpfef
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 448 YGFQWPSLIQRLSSRPGGPPKLRITGIDLPQPGfrPAGRVEETGRRLTKYAETFNVPFEF 507
                                                        ********************************9*9************************* PP

                                               GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                                        n+ +ak ++++++e+L+++++E+l+Vn++ +l +llde+v +es+rd+vLkl+++++P+v
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 508 NA-IAKWWDTIQIEDLKLDSDEVLVVNVIWRLRNLLDETVMVESPRDKVLKLMRKMNPDV 566
                                                        **.7******************************************************** PP

                                               GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                                        ++    +   n++ F +rf eal +ys++fd+le+ +pre+eer  +Ere++gre++nv+
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 567 LIQGTVNGTFNAPFFITRFREALFHYSTVFDMLETIVPRETEERLLIEREIFGREAMNVI 626
                                                        ************************************************************ PP

                                               GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                                                        aceg er+er et+++W+ r  +aGF+++pl+ ++++ ak  ++  + + + ++e+ ++l
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 627 ACEGIERIERPETFKQWQVRNLRAGFRQLPLNREIVNLAKDRVKSLYRKDFLIDEDGEWL 686
                                                        ***********************************************888********** PP

                                               GRAS 359 vlgWkdrpLvsvSaWr 374
                                                        ++gWk+r L+++S W+
  snap_masked-scaffold01337-abinit-gene-0.14-mRNA-1 687 LQGWKGRILFALSTWK 702
                                                        ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.349305682IPR005202Transcription factor GRAS
PfamPF035145.4E-116331702IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDSTIVDKKY SSIPLLPSDP IPSNPNVSWD GISHEDCDFS DVVLRYINQM LMEEDMEEKA  60
CMFQEALQDT EKSLYEALGE KYPPGPDNGL PPYVGPNHEI RDENYALNHI DYNSSASSAS  120
GDNLVDTGWV CDLGEHKSSY IATQSTSQLS YSSSHSPGNV VDGIMDSPVS TLRVPEILYD  180
NESIMQFKRG FEEASKFLPN GNGLIVDLES NGLSSKELKE SAKHTVFKVE YKHESQHFLD  240
GLRGRKNRHP EGVNLEGGRI NKQSVVYTES TVTSEMFDRI LLNFGKDESD LRQALQNGKS  300
NNVQQNGQSK GSNSGKARGK KQGGKRDVVD LRTLLTICAQ AVAANDQRTT NEVLKQIRLH  360
SSPLGDGMQR MAHYFADGLE ARIAGSGTQI YTALIGRLTS AADVLKAYHL FLAACPYKKL  420
SNFFSNKTIM NLAEKKTRLH IVDFGILYGF QWPSLIQRLS SRPGGPPKLR ITGIDLPQPG  480
FRPAGRVEET GRRLTKYAET FNVPFEFNAI AKWWDTIQIE DLKLDSDEVL VVNVIWRLRN  540
LLDETVMVES PRDKVLKLMR KMNPDVLIQG TVNGTFNAPF FITRFREALF HYSTVFDMLE  600
TIVPRETEER LLIEREIFGR EAMNVIACEG IERIERPETF KQWQVRNLRA GFRQLPLNRE  660
IVNLAKDRVK SLYRKDFLID EDGEWLLQGW KGRILFALST WKPTSEAHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5133870526382Protein SCARECROW
5b3h_A1e-5133870525381Protein SCARECROW
5b3h_D1e-5133870525381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905560.10.0scarecrow-like protein 14
RefseqXP_023905561.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2N9ESZ90.0A0A2N9ESZ9_FAGSY; Uncharacterized protein
STRINGEOY180430.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]