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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 338aa MW: 38507.8 Da PI: 5.3184 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 32 | 2.1e-10 | 15 | 71 | 36 | 94 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
+++ ++gr+W++ l +k +++++++GW +F + + + g +++Fk++g+s+f ++
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 15 TRINGPNGRVWQLGL--EKDENGTWFSDGWDKFLDYHSISNGHILIFKYEGNSTFDVLF 71
467789*********..**********************************99996655 PP
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2 | B3 | 56.7 | 4.5e-18 | 237 | 332 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.y 59
ffk+ ++ ++ ++ +++p fa ++ + e +tl+d++g+++ ++ yr +sg+
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 237 FFKAILRRHNIYNSFVYVPAGFAMKYL-P-SE--SITLQDSEGKRFPARCFYREGSGAgR 292
89999999***************9994.3.23..5*****************88888889 PP
EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++kGW F+++++L+egD++vF+l++r++ l v++fr+
snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1 293 SIGKGWATFAREHDLEEGDVLVFELINRETIVLEVHIFRA 332
9*************************999999*****996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MSDEVISAIN NKSITRINGP NGRVWQLGLE KDENGTWFSD GWDKFLDYHS ISNGHILIFK 60 YEGNSTFDVL FMFDMTAGKI DYPIDSLSSD EEPNFVANEE EEKDFGYNDL SVSTTYSPSQ 120 NSSESWTSDE YFSQGVLKKR NKYTTWTDRK KRHIRKGACS NGQAATQSCD KCGHHKESEF 180 AKFDEEAAQT PKEDSLLTTE VDDFSATSGF SKFSKTIQAA RKRARKAADM FQSEYPFFKA 240 ILRRHNIYNS FVYVPAGFAM KYLPSESITL QDSEGKRFPA RCFYREGSGA GRSIGKGWAT 300 FAREHDLEEG DVLVFELINR ETIVLEVHIF RAIDYLGM
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-19 | 215 | 336 | 25 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-19 | 215 | 336 | 25 | 146 | B3 domain-containing transcription factor VRN1 |
Nucleic Localization
Signal ? help
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|
No. |
Start |
End |
Sequence |
1 | 136 | 155 | LKKRNKYTTWTDRKKRHIRK |
2 | 137 | 150 | KKRNKYTTWTDRKK |
3 | 137 | 151 | KKRNKYTTWTDRKKR |