 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 309aa MW: 35238.5 Da PI: 4.5476 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 64.3 | 1.7e-20 | 104 | 157 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k
snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 104 KKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 157
56789************************************************9 PP
|
| 2 | HD-ZIP_I/II | 134.6 | 3.4e-43 | 103 | 193 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlE 60
ekkrrls eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE
snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 103 EKKRRLSPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 162
69********************************************************** PP
HD-ZIP_I/II 61 kdyeaLkraydalkeenerLekeveeLreel 91
+dy++Lk++yd+l ++ ++L ke+e+L++e+
snap_masked-scaffold00829-abinit-gene-0.14-mRNA-1 163 RDYDVLKSSYDSLYSNYDTLVKEHEKLKSEM 193
****************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001558 | Biological Process | regulation of cell growth |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
KLCLPTYVLS SFLLSLSLFC VCAPCLVGKT HVSTQDWMME SGRLFFDPTA CRGSNMLFLG 60
NGDNIFRGGR AIMSMEESSK RRSFFSSPDD LFDEEYYDEQ LPEKKRRLSP EQVHLLEKSF 120
ETENKLEPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYDVLKS SYDSLYSNYD 180
TLVKEHEKLK SEMTIGLQVV SLNEKLQAKG VAGADILAQK AEPLPGDITN VSALQFSVKV 240
EDRLSCGSDV VDEDGPQILD TGDSYFPSDN YPAEDDGSDD GHSYFRNVFV AAEPQHQEDE 300
EPLEWLEWS
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 151 | 159 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF529963 | 2e-78 | KF529963.1 Malus domestica homeobox-leucine zipper protein mRNA, complete cds. |
