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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 313aa MW: 35671.5 Da PI: 6.1392 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 104.9 | 4.2e-33 | 61 | 163 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEET CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkks 56
f+k ltpsdv+k++rlv+pk++ae++ g ++ ++ l++edesg+ W+++++y+++s
snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1 61 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGDSSDKGLLLSFEDESGKCWRFRYSYWNSS 120
99***************************966777899********************** PP
TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 57 gryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++yvltkGW+++vk+++L++gD+v+F+++++++ +l+++++r+
snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1 121 QSYVLTKGWSRYVKEKRLDAGDVVLFERHRTDCDRLFIGWRRR 163
***************************98889999******97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MFRNPNTPFN FNLNDENDND EDLDDQNPTS QPQEFEQQQQ QQPDDHQENE EAAAQQKEHM 60 FEKPLTPSDV GKLNRLVIPK QHAEKYFPLG GDSSDKGLLL SFEDESGKCW RFRYSYWNSS 120 QSYVLTKGWS RYVKEKRLDA GDVVLFERHR TDCDRLFIGW RRRGSVAAHD SSCGAGGSGG 180 GVVAHNSTTT SACASGAVSE AWTRAFYNTH PYPTHHHHHH QQHHSQPLPY QPDSCLHAAE 240 SSSSQVENQT TPVGNSKILR LFGVNLECQT EDESVPSVLP DNDHNHASST YQHYYHHQHD 300 YSSSVPHDHM VRY
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 2e-52 | 57 | 174 | 4 | 124 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-52 | 57 | 174 | 4 | 124 | B3 domain-containing transcription factor NGA1 |
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