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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | GRAS | ||||||||
Protein Properties | Length: 772aa MW: 86942.9 Da PI: 5.1913 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 346.9 | 3.4e-106 | 395 | 769 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 l++lL+ cA+avs+gd + a++lL++++++++p gd qRla++f+++L+arla++ ++ snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 395 LRNLLILCAQAVSAGDVRTANELLKQVRDHSTPFGDGSQRLAHFFANGLEARLAGTKVGT 454 6899**************************************************954444 PP GRAS 61 ykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120 ++ +++ + +e l+a+++ ++P+ +++ + + Il+a+e+++++H++Df+i+ snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 455 QIFYTSLVSKRVSATELLKAYRVHLSACPFKRITLFFGMRRILRAAEKATTLHVVDFGIQ 514 433445555555699********************************************* PP GRAS 121 qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +G+QWp L+q L++Rpegpp+lRiTgv+ p++g +e++eetg+rL+k++++++vpfe+ snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 515 YGFQWPILIQFLSKRPEGPPKLRITGVDLPQPGfrPTESIEETGRRLEKYCKRFNVPFEY 574 ********************************9*9************************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 n+++++++e++++eeL+++++E+laV ++++ ++llde+ + s+rd++L+l+++++P++ snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 575 NAIASQNWETIRMEELKIERNEVLAVACAFRTKNLLDETIEGISPRDAFLNLIRRMKPDI 634 ***999****************************************************** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +v + + + n++ F +rf eal +ysal+d+++++++r++ er + Ere+ gre++nv+ snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 635 FVNSIVNGSFNAPFFHTRFREALFHYSALYDMFDVTISRNNPERLMFEREFYGREAMNVI 694 ************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 aceg er+er et+++ + r+++aGFk +pl+++ + ++ ++ + + ++++e++++l snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 695 ACEGLERVERPETYKQCQVRISRAGFKLLPLDQEQISMFRAKMKAWYHKDFMLDEDNHWL 754 ***********************************************888********** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r +++ S+W snap_masked-scaffold00656-abinit-gene-0.45-mRNA-1 755 LQGWKGRIVYASSSW 769 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.765 | 369 | 750 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-103 | 395 | 769 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MDSSSNFLDG FTTMSPNSED NCSNLINEYT FNQLSAPTSD LNFLGSPNLS SDSDLGPAGF 60 ELSIPTAVGL EGQPYDAPHV AIPPMLQADS TSSPYDSDFS ETVLKYINQI LMEENIENKP 120 CMFYDPLGLK DTEKSFYDAL GQNYPPLPNL NSVDSPVLSS SSCDYGTSST SGSSTVNDSQ 180 GLSDLGEHNY QSSFSPPPIL GEYNVVQSNF KPTDESQFFG NLSNGSVNYL GYGLEVMAQN 240 IFTNRESMLQ FRRGLEEASK FLPKSNNLVI DLESNVVSSS KSKGEDLKVE SLVVKSEKEN 300 YLPDGSRGRK NHAREEIELE EGRSNKQTAV YVEETELSEM FDKVLLCTEA PAAMYGDNCE 360 HLQNDVSKAF LETQGGNGGK GSRNKKQVKK ETVDLRNLLI LCAQAVSAGD VRTANELLKQ 420 VRDHSTPFGD GSQRLAHFFA NGLEARLAGT KVGTQIFYTS LVSKRVSATE LLKAYRVHLS 480 ACPFKRITLF FGMRRILRAA EKATTLHVVD FGIQYGFQWP ILIQFLSKRP EGPPKLRITG 540 VDLPQPGFRP TESIEETGRR LEKYCKRFNV PFEYNAIASQ NWETIRMEEL KIERNEVLAV 600 ACAFRTKNLL DETIEGISPR DAFLNLIRRM KPDIFVNSIV NGSFNAPFFH TRFREALFHY 660 SALYDMFDVT ISRNNPERLM FEREFYGREA MNVIACEGLE RVERPETYKQ CQVRISRAGF 720 KLLPLDQEQI SMFRAKMKAW YHKDFMLDED NHWLLQGWKG RIVYASSSWV PV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-45 | 402 | 771 | 25 | 379 | Protein SCARECROW |
5b3h_D | 3e-45 | 402 | 771 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN900480 | 0.0 | JN900480.1 Quercus robur scarecrow-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904390.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | H9AWX5 | 0.0 | H9AWX5_QUERO; Scarecrow-like protein 1 | ||||
STRING | XP_009364376.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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