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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C3H | ||||||||
Protein Properties | Length: 149aa MW: 17066 Da PI: 8.3231 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.6e-07 | 18 | 39 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tGtC+ G++Ck +H++ snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1 18 CPVFEATGTCPQGSKCKLHHPK 39 *****************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.394 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 13 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEYISLLSQC RKKHSYVCPV FEATGTCPQG SKCKLHHPKN RSKGSKGKKR KRGGQQRKAQ 60 GRYFGSTHVN VSEPRTAVNE KHSTQHNDDI FIEGKYADYI SLEFSDEEVG ETNDLTSERM 120 FYDSDSSDLQ LDDLDELIKP FRIMNRNTA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 52 | GKKRKRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023887129.1 | 9e-69 | uncharacterized protein LOC111999239 isoform X1 | ||||
Refseq | XP_023887130.1 | 9e-69 | uncharacterized protein LOC111999239 isoform X2 | ||||
TrEMBL | A0A2N9GAX1 | 1e-67 | A0A2N9GAX1_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1156.4 | 8e-50 | (Carica papaya) | ||||
STRING | PGSC0003DMT400065147 | 2e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6103 | 10 | 10 |