 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
| Family |
Trihelix |
| Protein Properties |
Length: 260aa MW: 29280 Da PI: 10.0319 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 49.2 | 1.4e-15 | 28 | 117 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkek 53
+W+++ +++Liea ++ +l+rg+l++ +W+ev++++ ++ + rs +qCk++
snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1 28 CWSEDATHTLIEAWGDRYLDLNRGNLRQRHWQEVAAAVnarhatsASSKSFRSDIQCKNR 87
7***************************************99999888999********* PP
trihelix 54 wenlnkrykkikegekkrtsessstcpyfdqle 86
++ l+k+yk +k+ + +s +p+f +l+
snap_masked-scaffold00150-abinit-gene-0.19-mRNA-1 88 IDTLKKKYKIEKAKATA---AYVSAWPFFASLD 117
************99997...46779****9997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MESPSPSPSP SPSRPSTQTP AAALREDCWS EDATHTLIEA WGDRYLDLNR GNLRQRHWQE 60
VAAAVNARHA TSASSKSFRS DIQCKNRIDT LKKKYKIEKA KATAAYVSAW PFFASLDSLL 120
GSSFPKPSTA APRRNTPPWN LSTPIPVGPR THKRPAPSPA VDSSFRRNST AAAAEDGDGP 180
DSSSKEEKEV EKIGYRELAQ AIERFGEIYE RVEGAKQKQM MELEKQRMQF TKDLECHRMQ 240
LLLETQVQLQ KIKRARRQCQ
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 3e-72 | sequence-specific DNA binding transcription factors |
