PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g048824m
Common NameCISIN_1g048824mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 210aa    MW: 23915.1 Da    PI: 8.9417
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g048824mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer932.6e-292272459
        ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                       ++YkeC+kNhAas+Ggha DGC+Efmp        ++l+CaACgCHRnFHRrev  
  orange1.1g048824m 22 INYKECMKNHAASIGGHANDGCCEFMPR-----ADDSLTCAACGCHRNFHRREVRG 72
                       68*************************9.....3479***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-152273IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-242270IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.0E-252370IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1872469IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.32E-18120188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-29125190IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26130186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDLSLVPYKH QRPHPQQEPN IINYKECMKN HAASIGGHAN DGCCEFMPRA DDSLTCAACG  60
CHRNFHRREV RGQLLLQPKR LLLFKDPTKL VGAVDRYDEY DRRSETPERE EVNLNVCPPG  120
NVGPATGKSK RQRTKFTQEQ KDKMLEFAER IGWRMQRQDD VALNQFCNEV GVKRHVLKVW  180
MHNNKNASHR RKDESASQSP TEAAPPAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-261291871775ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132KSKRQR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473167.11e-157zinc-finger homeodomain protein 1-like
SwissprotQ9SB612e-49ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A067DCB81e-157A0A067DCB8_CITSI; Uncharacterized protein
STRINGXP_006473167.11e-156(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2110333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-52homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]