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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g048558m |
| Common Name | CISIN_1g048558mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
LBD |
| Protein Properties |
Length: 269aa MW: 30009.5 Da PI: 6.9333 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g048558m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 114.8 | 5.6e-36 | 12 | 108 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91
aCaaCk++rrkC++dCv+ pyfp +q+++f+ vhk+FG+sn++k++k+l++ + r++a++s+ +eA ++ +dPv+G +g ++kl+++ e l
orange1.1g048558m 12 ACAACKHQRRKCTQDCVFPPYFPGNQSEEFQLVHKIFGVSNLSKIIKNLETPQdRQEAVESIKWEAAMWEQDPVHGPLGAYRKLEREFEALM 103
7************************************************66555*********************************99987 PP
DUF260 92 aelal 96
+ ++
orange1.1g048558m 104 KMKNQ 108
65444 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 269 aa
Download sequence Send
to blast |
MANNGELGNR YACAACKHQR RKCTQDCVFP PYFPGNQSEE FQLVHKIFGV SNLSKIIKNL 60
ETPQDRQEAV ESIKWEAAMW EQDPVHGPLG AYRKLEREFE ALMKMKNQQT SQQIIDYGRG 120
PVMTTSGLIS YPTCQQEQAH VINSNEAPHA FIDQKFNTFG QPSDADYNRS GPTMVGHSYN 180
SPINDNNIVQ IMEQQGPRAR QRRGIATSGD VAINDGQLPR VGGECYDGVT SYYAPTLPSS 240
SHSQLSGPYA QLPYLHININ GFAPRREI*
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