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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
orange1.1g048296m |
Common Name | CISIN_1g048296mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
M-type_MADS |
Protein Properties |
Length: 167aa MW: 19594.4 Da PI: 5.4964 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g048296m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 78.5 | 4.7e-25 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
krien+s r+v fskRr+g++KKA+EL+ LCd+e+a+i+fs++g+ly +
orange1.1g048296m 17 KRIENNSSRKVAFSKRRKGMFKKASELCRLCDTEIAIIVFSPKGRLYSF 65
79*********************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 167 aa
Download sequence Send
to blast |
MPKKKPKGTG RKKIEIKRIE NNSSRKVAFS KRRKGMFKKA SELCRLCDTE IAIIVFSPKG 60 RLYSFGDHVI DKFIEDEIVS DIHSSSSSKE AIKENDCVTE LTGEEKSEEE DMHKEQTELE 120 FWWEQSIEDL NMEELEKYKS CLEELRSNVA MKVEEMVMRR TCEKDFL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-14 | 10 | 92 | 2 | 85 | Myocyte-specific enhancer factor 2B |
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