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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g047852m |
| Common Name | CISIN_1g047852mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
NAC |
| Protein Properties |
Length: 423aa MW: 47886.1 Da PI: 7.1094 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g047852m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 163.5 | 7.9e-51 | 14 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
l pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLp +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++
orange1.1g047852m 14 LLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKYDPWDLP-----REKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 99
579***************************.89***************.....789************************************ PP
NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+s+ +++ +glkk+Lvfykg+a kg ktdW+mhe+rl
orange1.1g047852m 100 YSSeGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 136
**956667***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MDERNENDKL DEILLPGFRF HPTDEELVGF YLKRKIQQRP LSIELIKQLD IYKYDPWDLP 60
REKEWYFYCP RDRKYRNSAR PNRVTGAGFW KATGTDRPIY SSEGNKCIGL KKSLVFYKGK 120
AAKGIKTDWM MHEFRLPSLI DSVPPKRFMD KTIPANDSWA ICRIFKKTNS TAQRALSQSW 180
VSPLPETASS TDAHVKSSYN TQFSLTSSMA QYFNCNNDIQ QQPSSSSSCL TNTSTNSTFS 240
PFDFVPYKPI NPVIISKPHH QLPNISSGDL TSSFMFSPFE PTIPAAKCNI NDVSSVLLSM 300
SSDSMLGDFG KASDQCIDFV GSQDQYSGFS TTALPHYEMQ AAVTDISNGD HHLHHEDVLM 360
KNQHMMNHVD DQWESTVRPI GFPFSLPMMS LAAETWKPSS LWDCSSCPRE ISTSVSTSKF 420
ML*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-52 | 5 | 174 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-52 | 5 | 174 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-52 | 5 | 174 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-52 | 5 | 174 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 3e-52 | 5 | 174 | 10 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-52 | 5 | 174 | 7 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-52 | 5 | 174 | 7 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
