PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047746m
Common NameCISIN_1g047746mg, LOC102614889
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 248aa    MW: 26791.2 Da    PI: 8.108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047746mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002795117123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C + F ++  L  H++ H
  orange1.1g047746m  95 FSCNYCRRKFYSSQALGGHQNAH 117
                        89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.92E-693123No hitNo description
PROSITE profilePS5015711.38595122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLPPNSNLEL ENDSEVSSHV ASNISAKEAS PGPSKDTNSS CLTNVIKLNP DPGPLSLDLT  60
LHFKSNDIDR LKGTGETSGE VAAAQTPAAT VPRVFSCNYC RRKFYSSQAL GGHQNAHKRE  120
RTMAKRAMRM GIFSDRYTSL ASLPLHGSAF RSLGIKAHAA MHQGVVPPQR PPDMRGGARF  180
EQGYFAMPMF MEDDDIDLFW PGSFRQVSEA VRGNPTLDFA QGSNGNFAAM PPPPRTDSSA  240
PDLTLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.178300.0fruit
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448103.10.0zinc finger protein 4
RefseqXP_006448107.10.0zinc finger protein 4
RefseqXP_006469288.10.0zinc finger protein 4
RefseqXP_006469289.10.0zinc finger protein 4
RefseqXP_006469290.10.0zinc finger protein 4
RefseqXP_006469293.10.0zinc finger protein 4
RefseqXP_006469294.10.0zinc finger protein 4
RefseqXP_015382847.10.0zinc finger protein 4
RefseqXP_024047894.10.0zinc finger protein 4
RefseqXP_024951013.10.0zinc finger protein 4
RefseqXP_024951014.10.0zinc finger protein 4
RefseqXP_024951015.10.0zinc finger protein 4
RefseqXP_024951016.10.0zinc finger protein 4
RefseqXP_024951017.10.0zinc finger protein 4
RefseqXP_024951018.10.0zinc finger protein 4
RefseqXP_024951019.10.0zinc finger protein 4
RefseqXP_024951020.10.0zinc finger protein 4
RefseqXP_024951021.10.0zinc finger protein 4
RefseqXP_024951022.10.0zinc finger protein 4
RefseqXP_024951023.10.0zinc finger protein 4
SwissprotQ392631e-46ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A067F4030.0A0A067F403_CITSI; Uncharacterized protein
TrEMBLV4UB170.0V4UB17_9ROSI; Uncharacterized protein
STRINGXP_006469288.10.0(Citrus sinensis)
STRINGXP_006448099.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-48zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]