PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047622m
Common NameCISIN_1g047622mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 300aa    MW: 35106.1 Da    PI: 6.2296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047622mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.71.5e-2581401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                        lp G++F+P+de lv++yL +k++g++ ++ +  +++ ++y + ePw++ +++ +    + +++yfF++ +kk+ +g+r  r + +g+W+  
  orange1.1g047622m   8 LPLGCKFQPSDELLVQFYLFNKISGTPAPFVDDlVRTENLYGFkEPWQIWRQFGGpdleDGEDLYFFTPLKKKSVNGSRIDRRVGTGTWQGE 99 
                        699************************88866648888***9879****754433334356789**************************99 PP

                NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+v+s+ +++++g kk + + k ++p+  +  W+mhey+l
  orange1.1g047622m 100 DAGKAVVSRkSKKKIGSKKRFRYEKDKSPH--NGCWIMHEYSL 140
                        99999999867788*********9777766..99*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-305161IPR003441NAC domain
PROSITE profilePS5100532.4888162IPR003441NAC domain
PfamPF023653.2E-179140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MERTRPPLPL GCKFQPSDEL LVQFYLFNKI SGTPAPFVDD LVRTENLYGF KEPWQIWRQF  60
GGPDLEDGED LYFFTPLKKK SVNGSRIDRR VGTGTWQGED AGKAVVSRKS KKKIGSKKRF  120
RYEKDKSPHN GCWIMHEYSL NPSLLPQNLR SSDLVLCRIR KNEDIDQPAE PVFVEEHQYH  180
YLQEIQPQPS TELAPHNHLQ SFQNHHLMQQ SPACFFRAQE ENYQQSMTQE DPHELELSDS  240
HQNMQDTPVT EQNSHEQLQL SAETHQHFTS SDLQEYQQMP VTDQIPHHQL QLSFEGYRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-17816315171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430447.10.0NAC transcription factor 47
RefseqXP_006430448.10.0NAC transcription factor 47
TrEMBLA0A067DD920.0A0A067DD92_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006430447.10.0(Citrus clementina)
STRINGXP_006430448.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2754123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.12e-16NAC family protein