PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g047185m
Common NameCISIN_1g047185mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 215aa    MW: 23999.3 Da    PI: 9.8104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g047185mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08154201247
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                        g W + Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r+ ++
  orange1.1g047185m 154 GVWNAGEDIALLNALKAFPKDvplRWEKIAAAVP-GRSKAACMKRFSDL 201
                        78********************************.**********9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.0535293IPR017877Myb-like domain
SMARTSM007177.0E-456109IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-65897IPR009057Homeodomain-like
SMARTSM007175.2E-8152204IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-11153202IPR009057Homeodomain-like
PfamPF002492.4E-7154201IPR001005SANT/Myb domain
PROSITE profilePS500907.166154202IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.5E-7154201IPR009057Homeodomain-like
CDDcd001671.29E-5156198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
PNIEKKLQKP QKNRSLANKS PDFIPGSVPI VENSNGSIGN ESKGEKVEVL QRKSEEEKEW  60
NEEDIEILKK QMVKNPVGKP KRWEVIAEAF NGRHRVESVI KKAKELGEKK IDDSDSYNQF  120
LKNRKAIDMR VVQENCEDSK KESQENVVVG GGGGVWNAGE DIALLNALKA FPKDVPLRWE  180
KIAAAVPGRS KAACMKRFSD LKRDFRSSKA GDEA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.53170.0fruit| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436809.11e-150transcription factor MAMYB
RefseqXP_006485375.11e-150transcription factor MAMYB
SwissprotQ9ASQ25e-62MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A067DGW81e-150A0A067DGW8_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PCB11e-149A0A2H5PCB1_CITUN; Uncharacterized protein
TrEMBLV4VCG31e-149V4VCG3_9ROSI; Uncharacterized protein
STRINGXP_006485375.11e-150(Citrus sinensis)
STRINGXP_006436809.11e-150(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-58MYB_related family protein